RNA id: TU77168



Basic Information


Item Value
RNA id TU77168
length 375
lncRNA type intronic
GC content 0.43
exon number 1
gene id G57199
representative True

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37303870 ~ 37304244 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


CCGGTTATGTAGCGTGCTatcagctactggagccctgagagagcacaactggtcttgctctctccgggtgggtacagtacagtagatggcgctctttcccctcatcactactagagtgatgtggatcagcacaaggctgcgtctgtgagctgatgtatcagaaccgagtcactgcacttttcTTCCgtgcgttagcgctgtgatgctactcggactATAGAGTAGGTTTGGTAaaatggctgtgtaaattggggagaaaatgggatagaaatttgacataaaatcatgaaaaaaagctGTAATAAAGCAGCTTTTAACTTTGTTGTTGAGTTTGTCTGTTTAAGGTTATCTTCTTGAAACTAAAATCGTGAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77164 lncRNA downstream 149 37302047 ~ 37303721 (-) False LOC103043112
TU77163 lncRNA downstream 149 37302134 ~ 37303721 (-) False LOC103043112
TU77126 lncRNA downstream 4263 37281141 ~ 37299607 (-) False brpf3
TU77142 lncRNA downstream 50071 37249860 ~ 37253799 (-) True G57178
TU77138 lncRNA downstream 58489 37240655 ~ 37245381 (-) True G57176
TU77170 lncRNA upstream 4425 37308669 ~ 37309114 (-) True G57201
TU77189 lncRNA upstream 76832 37381076 ~ 37389419 (-) True G57218
TU77196 lncRNA upstream 141490 37445734 ~ 37446043 (-) True G57225
TU77248 lncRNA upstream 339956 37644200 ~ 37675261 (-) True G57272
TU77342 lncRNA upstream 541815 37846059 ~ 37846284 (-) True G57351
XM_022670612.1 mRNA downstream 4572 37281113 ~ 37299298 (-) True brpf3
XM_022670597.1 mRNA downstream 242172 37050720 ~ 37061698 (-) True slc2a6
XM_022670958.1 mRNA downstream 255254 37043801 ~ 37048616 (-) True LOC107197187
XM_022670596.1 mRNA downstream 485659 36796730 ~ 36818211 (-) True LOC103045252
XM_022670595.1 mRNA downstream 511426 36785308 ~ 36792444 (-) True LOC111192678
XM_022670620.1 mRNA upstream 86198 37390442 ~ 37476012 (-) True LOC111192681
XM_022670617.1 mRNA upstream 243515 37547759 ~ 37599298 (-) False tbc1d22b
XM_022670616.1 mRNA upstream 243515 37547759 ~ 37599298 (-) True tbc1d22b
XM_007251369.2 mRNA upstream 326813 37631057 ~ 37635455 (-) True LOC103031835
XM_022670928.1 mRNA upstream 504304 37808548 ~ 37842410 (-) True LOC103047788
TU76973 other downstream 511432 36785462 ~ 36792438 (-) False LOC111192678
TU76959 other downstream 565656 36690345 ~ 36738214 (-) False LOC107196826
TU76961 other downstream 580505 36690345 ~ 36723365 (-) False LOC107196826
TU76929 other downstream 900572 36402850 ~ 36403298 (-) True G57014
TU76887 other downstream 983175 36319056 ~ 36320695 (-) True G56987
TU77626 other upstream 2217300 39521544 ~ 39562891 (-) True LOC103030299
TU77628 other upstream 2217300 39521544 ~ 39562891 (-) False LOC103030299
TU77629 other upstream 2217300 39521544 ~ 39562891 (-) False LOC103030299
TU77630 other upstream 2217300 39521544 ~ 39562891 (-) False LOC103030299
TU77631 other upstream 2217300 39521544 ~ 39562891 (-) False LOC103030299

Expression Profile