RNA id: TU77221


Basic Information

Item Value
RNA id TU77221
length 214
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G57246
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37644188 ~ 37675261 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaactgtggacgctgtgagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacaataaaaccacggctgatcaaatcacgcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaatcaattattgtgctctaaaaccaggtgtttcagtttcattgtccaacccctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77211 lncRNA upstream 35387 37608516 ~ 37608801 (+) True G57239
TU77199 lncRNA upstream 95401 37477232 ~ 37548787 (+) True G57227
TU77198 lncRNA upstream 95401 37547561 ~ 37548787 (+) False G57227
TU77201 lncRNA upstream 97929 37486371 ~ 37546259 (+) True G57229
TU77182 lncRNA upstream 169410 37473996 ~ 37474778 (+) True G57212
TU77270 lncRNA downstream 175940 37851201 ~ 37935481 (+) True G57292
TU77279 lncRNA downstream 251123 37926384 ~ 37940711 (+) True G57300
TU77280 lncRNA downstream 251123 37926384 ~ 38145181 (+) False G57300
TU77292 lncRNA downstream 385963 38061224 ~ 38126325 (+) True G57310
TU77293 lncRNA downstream 385963 38061224 ~ 38126325 (+) False G57310
XM_022670610.1 mRNA upstream 365798 37254838 ~ 37278390 (+) True LOC103043413
XM_022670611.1 mRNA upstream 365798 37254838 ~ 37278390 (+) False LOC103043413
XM_022670608.1 mRNA upstream 393218 37240674 ~ 37250970 (+) True pqlc2
XM_007245860.3 mRNA downstream 118062 37793323 ~ 37800678 (+) True LOC103038870
XM_022670618.1 mRNA downstream 422293 38097554 ~ 38137323 (+) True LOC103037590
XM_022670619.1 mRNA downstream 499710 38174971 ~ 38205601 (+) True LOC111192680
XM_022670624.1 mRNA downstream 1434075 39109336 ~ 39153351 (+) True agtpbp1
XM_022670623.1 mRNA downstream 1436418 39111679 ~ 39153351 (+) False agtpbp1
TU76991 other upstream 638390 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 1680869 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 2219715 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 2405088 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 2892625 34713218 ~ 34751563 (+) True G56414
TU77738 other downstream 2369392 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 2924730 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 2999779 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 3699558 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 3762766 41438027 ~ 41438911 (+) True G58025

Expression Profile