RNA id: TU77293


Basic Information

Item Value
RNA id TU77293
length 438
lncRNA type sense_over
GC content 0.56
exon number 2
gene id G57310
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 38061224 ~ 38126325 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agttggggcgccgagtggtccagcggtctaaagcgctgccactatgagcaggaggtcgccggttcgaaccccagctcatgcagctttgccatcaagctgccggcgctcagagggagcaaaattggccctgctccctctgggtgggtagatggcgctctttccccacatcactcctatggtgatgtctgcagcacggggcgtctgtgagctgatgtaccggagccgagccgctgcgctttcctccaagcgcgctggctgctcggcaatgctgaatcggcagcagctcgaaaagaagcggtggctgatttcacatgtatcggaggaagcatgtgttagtcttcaccctcctggtgtgttgaggtatcactagtgatagggggagtcctaatgaatgggtaattggccgtgtaaattggggagaaaatgggaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77279 lncRNA upstream 120513 37926384 ~ 37940711 (+) True G57300
TU77270 lncRNA upstream 125743 37851201 ~ 37935481 (+) True G57292
TU77221 lncRNA upstream 385963 37644188 ~ 37675261 (+) True G57246
TU77211 lncRNA upstream 452423 37608516 ~ 37608801 (+) True G57239
TU77198 lncRNA upstream 512437 37547561 ~ 37548787 (+) False G57227
TU77305 lncRNA downstream 81131 38207456 ~ 38209045 (+) True G57319
TU77314 lncRNA downstream 87930 38214255 ~ 38216252 (+) True G57326
TU77323 lncRNA downstream 107372 38233697 ~ 38234701 (+) True G57334
TU77332 lncRNA downstream 122944 38249269 ~ 38249888 (+) True G57343
TU77395 lncRNA downstream 196865 38323190 ~ 38323437 (+) True G57397
XM_007245860.3 mRNA upstream 260546 37793323 ~ 37800678 (+) True LOC103038870
XM_022670610.1 mRNA upstream 782834 37254838 ~ 37278390 (+) True LOC103043413
XM_022670611.1 mRNA upstream 782834 37254838 ~ 37278390 (+) False LOC103043413
XM_022670607.1 mRNA upstream 810254 37242191 ~ 37250970 (+) False pqlc2
XM_022670619.1 mRNA downstream 48646 38174971 ~ 38205601 (+) True LOC111192680
XM_022670624.1 mRNA downstream 983011 39109336 ~ 39153351 (+) True agtpbp1
XM_022670623.1 mRNA downstream 985354 39111679 ~ 39153351 (+) False agtpbp1
XM_022670625.1 mRNA downstream 992473 39118798 ~ 39153351 (+) False agtpbp1
XM_007237424.2 mRNA downstream 1131200 39257525 ~ 39267633 (+) True hnrnpk
TU76991 other upstream 1055426 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 2097905 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 2636751 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 2822124 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 3309661 34713218 ~ 34751563 (+) True G56414
TU77738 other downstream 1918328 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 2473666 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 2548715 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 3248494 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 3311702 41438027 ~ 41438911 (+) True G58025

Expression Profile