RNA id: TU77366


Basic Information

Item Value
RNA id TU77366
length 2841
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G57368
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 38131481 ~ 38136001 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attttttagttTGAGTTGAGGCAAATTTTTACCCATGCCGCCTGGAGCGGAGTAGCTATTGGTGTTGGAGACGTTCGAGATGGTGGAGACGTTAGAGACGTATTCATAATCATCATCTGTGGAGCTGTGGCTGTCAgctgaggacacacacacacaatacacacacacacacaatatacaatacacaaCAGGTTCAGTACACCTtataacaggggtgtccaaactacggcccgcgggccatttagaggtattttagaaatagaatgaaagttcgcccgctgttaagcaggtttttataatgtgagattcaaagtttgaacgctaggtgtcaaaaacggggcaaagagtctaaaagcggagagagtgcgcagttctagcacagaaaaacgggccaaagagtctaaaagcggagagagtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagagtgcgcatttctagcacagaaaaacggcccaaagagtctaaaagcggagagagtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagagtgcgcatttctagcgcagaaaaacagggcaaagagtctaaaagtggagagagtgccaaagagtctaaaagttgccgtaattaaggagtttaatattacaaGGTTATTCATTGGGATGCTTTGAGTACACCAATGGTACCCCCAACAGTTTGGGAACCACTTTTTTACTGCACATGGCAGGAGTTTCTGATAAAAAGGCCAGAGACTAAATAGTTCTTCTAATAAACTGGCAACTGGTTGTTCTTTTTTCTCGTCAGCTCTGTTTGCCAAAGAAGAAGCAGCTTTAAACTTCCTTCCACAGGAAGACGAAGTGTAAAATACGAGCGAACTGTGAAAACGGCGAGAAGAGCTGCAGTCTGAAGAACGCAGCAAACTCACAGCAGGAACACACTGTTATCATGGCAATTACCCCCACCGGTATATGAGACTGAGTGGAGCTGAGCTCCTTTATGAAATATCCTTCATTTGTCAGATAAATTGTGAATATAAATGGGGAAACAATATGCACATATGAAATTGAGTGCAGATGAGATTGTTGATAAAGCCCTGCATCTCAGATTGACTTTATGAACTGTATGAATATAGACCATCCGTCTGACAGGTTGCGGCTGAGCCGGTGGGTGGCTGAGGAAACTGGATGAGAATTAAATACAGCTTGTCAAACAGTACTTAGATAATATGCTGGAGAAATgagagatctgttcttaatgaAATGGTTTTAAAGCTCTGATATGGCCAGATGTAATCGAAGCTTTAAATCTTTAcaatccattacaatggacatcatgtattttctatatttctgaatGTTTTGCTGTATAcaaacactatttgagagctgttatccatcagaatagaccatgaaccataATTTAGCCAATGAAccagtttataaaccaatgaaacaatagcttggccccgcccacttgAGAAAAGCTGGAAAAACAGTAGCACTAAAGCCATCGAGTAatttttacaaagaaaaaaaatactttaaaagggCATGGAGAACTCATCTAGGAGGTcccaaaataaaacagttttaaagctCCAATAAGAAATCGTTTGCAGCTATTGGCCAGATGTATTTGAAGTTTTAAAGAAGAAATTGGGGTAAAATCAAATTACACATGATGTATGATCAGCTTACACATGTTTAGTATCTTTGTTAGCGAGTAAAGTTAAGTTGCTTTGTTAGATTTTGAACAAGAAATGCTAAACTAACATGGCTAACAAACACTGAACTTATCACCAGATGAGTTACATATTAGTTaattgctatatagattttatagtagaatattataaaagtcttcttttctgtgctttACAGACAGAACAAAGCATTCTTACAATTGTTTTCTATCACTATCACCgaagataattcaggtctgaaagggttaaagaagAAATTTGGGTAAAAATCAAGTTCACATCATTTAAGATTAACTTAAATGACATCATGAGTGACTGGCCTaccgaagaaaaaaaaaaaaaattactttaaaagggcatggagaactcatccaggaggtcccaaaataaaatggttttaaaGCTCCAATAAGAAATCGTTTGCAGCTATTGGACagatttattaaagttttaaaggagaaattgGGGGAAATTCAGCTCACACGTTTAGCGTATGTAATCTTTTTAGCGAGTAAAGTTAAGATGCTTTGTTAGTTTTTGAACAAGAAATACTAAACTAACATGGCTAACGAACATTGAACTTATTACCAATCAAAATCTTGCATCAAACTTAAAAAGTATAAAGAATAAGGGTGGAAATCTTCAGGCatttagagtaaaataaataagcacaCATCAAATATCAAcagccacaaccaggcctgattactgccagacacTATGAGTGACTGGCctaccgaaaaaaaaaaaattaccccaaaagggcatggagaactcatccaagaggtcccCAAAAAAaccccagaacaacatctaaaagATCCATGGAAGTATCTATGTATATACAAAAGCCCCGTCTCACATCATGATGATGCACAGGACTTAAAGGAAAATATTCTGTGGGCTggcgagacaaaagtggaacatataattttagaaaaaacatCATATGGAAAATCAAACATGGTGGGGCTTGTAATATAATAAGCACACATCAAATATCAAATGCAGTATGCCTGGATGACTGGTGTGTACATCATATTAATCTGATTTTCACCAAAATAGTTCTTTAAAAGTACAAAACAAGGAAGTGGACATACCTGTGAGTCTCTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77356 lncRNA downstream 5289 38061224 ~ 38126192 (-) True G57364
TU77361 lncRNA downstream 10770 38097596 ~ 38120711 (-) True G57366
TU77342 lncRNA downstream 285197 37846059 ~ 37846284 (-) True G57351
TU77248 lncRNA downstream 456220 37644200 ~ 37675261 (-) True G57272
TU77196 lncRNA downstream 685438 37445734 ~ 37446043 (-) True G57225
TU77372 lncRNA upstream 116646 38252647 ~ 38252920 (-) True G57374
TU77386 lncRNA upstream 125771 38261772 ~ 38305314 (-) False LOC111192682
TU77468 lncRNA upstream 1007115 39143116 ~ 39150821 (-) True G57452
TU77466 lncRNA upstream 1015917 39151918 ~ 39153351 (-) True G57450
TU77463 lncRNA upstream 1088940 39224941 ~ 39225592 (-) True G57447
XM_007245882.2 mRNA downstream 36038 38087587 ~ 38095443 (-) True LOC103047168
XM_022670615.1 mRNA downstream 45169 38008554 ~ 38086312 (-) False gripap1
XM_022670614.1 mRNA downstream 45169 38008554 ~ 38086312 (-) True gripap1
XM_007245858.3 mRNA downstream 173106 37853780 ~ 37958375 (-) True kcnd1
XM_022670928.1 mRNA downstream 289071 37808548 ~ 37842410 (-) True LOC103047788
XM_022670621.1 mRNA upstream 125116 38261117 ~ 38305466 (-) True LOC111192682
XM_007260144.3 mRNA upstream 187984 38323985 ~ 38408228 (-) True LOC103022934
XM_022670622.1 mRNA upstream 274801 38410802 ~ 38471423 (-) True LOC103028719
XM_007237420.3 mRNA upstream 957355 39093356 ~ 39110114 (-) True naa35
XM_007237422.3 mRNA upstream 1031793 39167794 ~ 39248420 (-) False ntrk2
TU76973 other downstream 1339043 36785462 ~ 36792438 (-) False LOC111192678
TU76959 other downstream 1393267 36690345 ~ 36738214 (-) False LOC107196826
TU76961 other downstream 1408116 36690345 ~ 36723365 (-) False LOC107196826
TU76929 other downstream 1728183 36402850 ~ 36403298 (-) True G57014
TU76887 other downstream 1810786 36319056 ~ 36320695 (-) True G56987
TU77626 other upstream 1385543 39521544 ~ 39562891 (-) True LOC103030299
TU77628 other upstream 1385543 39521544 ~ 39562891 (-) False LOC103030299
TU77629 other upstream 1385543 39521544 ~ 39562891 (-) False LOC103030299
TU77630 other upstream 1385543 39521544 ~ 39562891 (-) False LOC103030299
TU77631 other upstream 1385543 39521544 ~ 39562891 (-) False LOC103030299

Expression Profile