RNA id: TU77395


Basic Information

Item Value
RNA id TU77395
length 248
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G57397
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 38323190 ~ 38323437 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gattgacctcctcagtcatagttacaataagatcaaatatccagaaaaacaaatgagggaacttagTTTTGATCTTCCcctgatcttcagaagaaccaactgatgtaacttcctgttgttgatgtgacttgtagaaagttctagatgttttaaatggtttaatgtgttacggtaacaggaatgagtaaaacccagggacacaacttatatgtgtattttaacttaaatattattgatttattatgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77332 lncRNA upstream 73302 38249269 ~ 38249888 (+) True G57343
TU77323 lncRNA upstream 88489 38233697 ~ 38234701 (+) True G57334
TU77314 lncRNA upstream 106938 38214255 ~ 38216252 (+) True G57326
TU77305 lncRNA upstream 114145 38207456 ~ 38209045 (+) True G57319
TU77292 lncRNA upstream 196865 38061224 ~ 38126325 (+) True G57310
TU77434 lncRNA downstream 771900 39095337 ~ 39097423 (+) True G57427
TU77441 lncRNA downstream 785807 39109244 ~ 39153476 (+) False agtpbp1
TU77473 lncRNA downstream 939734 39263171 ~ 39263975 (+) True G57457
TU77476 lncRNA downstream 1042219 39365656 ~ 39370585 (+) True frmd3
TU77495 lncRNA downstream 1050563 39374000 ~ 39377061 (+) True G57473
XM_022670619.1 mRNA upstream 117589 38174971 ~ 38205601 (+) True LOC111192680
XM_022670618.1 mRNA upstream 185867 38097554 ~ 38137323 (+) True LOC103037590
XM_007245860.3 mRNA upstream 522512 37793323 ~ 37800678 (+) True LOC103038870
XM_022670610.1 mRNA upstream 1044800 37254838 ~ 37278390 (+) True LOC103043413
XM_022670624.1 mRNA downstream 785899 39109336 ~ 39153351 (+) True agtpbp1
XM_022670623.1 mRNA downstream 788242 39111679 ~ 39153351 (+) False agtpbp1
XM_022670625.1 mRNA downstream 795361 39118798 ~ 39153351 (+) False agtpbp1
XM_007237424.2 mRNA downstream 934088 39257525 ~ 39267633 (+) True hnrnpk
XM_022670626.1 mRNA downstream 935907 39259344 ~ 39267633 (+) False hnrnpk
TU76991 other upstream 1317392 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 2359871 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 2898717 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 3084090 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 3571627 34713218 ~ 34751563 (+) True G56414
TU77738 other downstream 1721216 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 2276554 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 2351603 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 3051382 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 3114590 41438027 ~ 41438911 (+) True G58025

Expression Profile