RNA id: TU77473


Basic Information

Item Value
RNA id TU77473
length 761
lncRNA type intronic
GC content 0.35
exon number 2
gene id G57457
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39263171 ~ 39263975 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtgtgtactgtatttttgcattataaggcgcacttttaatgaacgtctattttcatacatgagACGTGCTGGATTTCAAGACTGCAGTTcagtatactcacctctgagcgacgaaagagctagtgcgtctaatgcttatactgctccagcagtgctagccggggttaacagcagcaacaggccgataatactcacctctgaatggggaaatagtggTTAACTGCTAATCCTAATACTGCTTCatcctctgtgctggagaactaaactgaaactcctgtataaaacCTGCAATAAATCTGTGCTTAGTGTTtcaaaatcaggcaaaatggtTTGTAAACTGACACAAATTGGTAATTCactgaactatatatatatatatatatatatatatatatattctctgaTGTCTAGTTATATGTAAgcttattctgtattctgtagtTGGGTGTTAGTTTTAATATGGTATTTTTTAGCCATTAAAACAGTGGCACAATTAAGTGCATTTCTGTCACTTAATGTAATCCCCTTACATTTGCACTAATGTGTTACTTTGAACAACTACATGCCTATTTTCAGATGGATTATTTACATACCTATGCCTATTCCAGTTTTGCCAGTTTAGCTCTGCTCATTCAAAACAGAGCTGGTTTGTCCAACCAGTATAAAGAGCACTATAGAAATCACaagcttaatttaaatgttagAATTATAGATTGGTTTGAAGATATGCATTATATTTAGAACATACCAAGTCAA

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77441 lncRNA upstream 109695 39109244 ~ 39153476 (+) False agtpbp1
TU77434 lncRNA upstream 165748 39095337 ~ 39097423 (+) True G57427
TU77395 lncRNA upstream 939734 38323190 ~ 38323437 (+) True G57397
TU77332 lncRNA upstream 1013283 38249269 ~ 38249888 (+) True G57343
TU77323 lncRNA upstream 1028470 38233697 ~ 38234701 (+) True G57334
TU77476 lncRNA downstream 101681 39365656 ~ 39370585 (+) True frmd3
TU77495 lncRNA downstream 110025 39374000 ~ 39377061 (+) True G57473
TU77523 lncRNA downstream 233053 39497028 ~ 39497353 (+) True G57498
TU77532 lncRNA downstream 296453 39560428 ~ 39562898 (+) True G57505
TU77572 lncRNA downstream 462726 39726701 ~ 39730031 (+) True G57538
XM_022670624.1 mRNA upstream 109820 39109336 ~ 39153351 (+) True agtpbp1
XM_022670623.1 mRNA upstream 109820 39111679 ~ 39153351 (+) False agtpbp1
XM_022670625.1 mRNA upstream 109820 39118798 ~ 39153351 (+) False agtpbp1
XM_022670619.1 mRNA upstream 1057570 38174971 ~ 38205601 (+) True LOC111192680
XM_022670618.1 mRNA upstream 1125848 38097554 ~ 38137323 (+) True LOC103037590
XM_007237423.2 mRNA downstream 5247 39269222 ~ 39276715 (+) True c6h9orf64
XM_007237427.3 mRNA downstream 14452 39278427 ~ 39287807 (+) False gkap1
XM_022670627.1 mRNA downstream 14568 39278543 ~ 39287807 (+) True gkap1
XM_007237429.3 mRNA downstream 28096 39292071 ~ 39365820 (+) False frmd3
XM_007237428.3 mRNA downstream 28097 39292072 ~ 39365820 (+) False frmd3
TU76991 other upstream 2257373 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 3299852 35956104 ~ 35963319 (+) False G56701
TU76213 other upstream 3838698 35420787 ~ 35424473 (+) True G56504
TU76153 other upstream 4024071 35226496 ~ 35239100 (+) False ikbkb
TU76054 other upstream 4511608 34713218 ~ 34751563 (+) True G56414
TU77738 other downstream 780678 40044653 ~ 40046467 (+) True G57664
trnaw-cca_40 other downstream 1336016 40599991 ~ 40600062 (+) True trnaw-cca_40
TU78022 other downstream 1411065 40675040 ~ 40680555 (+) True G57856
TU78217 other downstream 2110844 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 2174052 41438027 ~ 41438911 (+) True G58025

Expression Profile