RNA id: TU77825


Basic Information

Item Value
RNA id TU77825
length 1609
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id G57729
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40121485 ~ 40124946 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAACAATTGCTTGTCTGCAAtaccaataataatataataattattagaacccaagaacaaaataaaatggaGATAAAGTGAATTACAGTGAGGTGTTTGTACAGTTCCTTAAACTTCTGGGGTAAGGGCAGAAGAGAAgaagtggggaaaaaaagagagacagcagaataagacaaaaataaagcATCAAGGGAAAAGTAAaagaactgaattactgaaatggtTAAATTAAAAGTCAGTAGATAGAGAGGAATAATATGCATTGACCTATTTTGGGAAAATAGCACCAAAACTCaaatgcctgttttttttccttacccTCCCAGACCCCAAAATAATCTACTAGTTTATTCAAAATCTGAGTCTCCCTCGACAGCCTCAACAAAACACGAGActcaatacataaaaaatacaagtacTGACATGGCAACTCTGCCACACTCCTCTTTGTATGTCCGATGCCACCAAAccagtgtgtgagtgaggggggtggggtgggtgtGTAGCTAAACTATGTCACATTATGCAGGAAGGAAAGAGAACTGGCAATTCCTGGGTTCAGCACTGTTTGGTACAGTTTAAACAGACAGTCAGGCCAGAGAGCAAATTCCCAGTAATCCCCCACTGAAAAGCAGCAGACAGAAAGTgaaggggggagggggagggaaTACCTCAAACAAAACATCCTGCATAAACTGAGAAcaataatgaagaggaagagcaggaggaggaggagtttcAGATGAAGGATGTGAAAAGATGTAGAGACATGATGAACTGATGAGAACACAGGAGTGCAGAAGGTAACAAACGGTGCTGATGGAGGGAGTGTGCATGAGGGGTGAAATGAAATGAGCAGGTTTGTCGAGGACAGTAGGTACTGGTAGTTGTGTGcgcacgcacatacacacacaactgtGAGCTTAATAAGTGTGACGAATGAACGAGTATGTAATCTCCTCAGCCGTCTGGGTGCTTCTTTGGCCCAGAGTGATTTACTGTACTGTTGCTTTGTGGATCTTCGTTCCACCGCCATCCTCTCCACAGACCACAAACATACAACTCATCACaaaacCTCTTGGTTTATCTGTACAAGTGTGTGGTTAAGAGCTCGTGCTTTCTTGGACTCCGAGGGCTCAGTGGGTTTGGGTCCTCCTTCTGCCTTCTGACTCTTCCTTTTCCTCCGGGAGTCCTTCGACCTGCTGCCACGACCTGAGAGCTTCTGGTGACTGGTGAGGAGGCGATGATGCTGCTTGCAGGAGTCTGTAGATAGTGTGTGTCTGGTCTAACGTGACTTCCAGCAGGTCGCCCTCTAGCTGAAGCTCCTCTAACTGCGCTCTGGTTGAGGGGGTCAGTTCAATCGCTGGCCCCTTAAGACATGATACCAGTGGTACCAGAGACtcaacccCTGTTATTTTATGAGTATCTGTCTTCTTAATTCCATTTTCACAGCCAGACTGTATTCCATTAGCAGCTTTCTTCTCATCCTTATTCGCCGTGTCTGCCTCTTCCGTCAAGTCTATAACACCATCCTCTTGTTCCTCTGAGTCTGACAGCACAATAACGTCCTCCTTGTTCCCCTTcttttcctcttcctcctgttcCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77786 lncRNA downstream 31234 40086074 ~ 40090251 (-) True G57704
TU77784 lncRNA downstream 32358 39987484 ~ 40089127 (-) False G57704
XR_002650085.1 lncRNA downstream 154165 39912120 ~ 39967320 (-) False LOC111192684
XR_002650084.1 lncRNA downstream 154165 39912385 ~ 39967320 (-) True LOC111192684
TU77749 lncRNA downstream 292133 39822681 ~ 39829352 (-) True G57671
TU77855 lncRNA upstream 36581 40161527 ~ 40162104 (-) True G57748
TU77865 lncRNA upstream 38038 40162984 ~ 40164280 (-) True G57754
TU77866 lncRNA upstream 38070 40163016 ~ 40164280 (-) False G57754
TU77900 lncRNA upstream 130621 40255567 ~ 40255816 (-) True G57782
TU77910 lncRNA upstream 166031 40290977 ~ 40291186 (-) True G57788
XM_022670641.1 mRNA downstream 279539 39830654 ~ 39841946 (-) True gpkow
XM_007243218.3 mRNA downstream 300031 39815860 ~ 39821454 (-) True timm17b
XM_022670638.1 mRNA downstream 306464 39806607 ~ 39815021 (-) True praf2
XM_022670637.1 mRNA downstream 318833 39757462 ~ 39802652 (-) False LOC103034295
XM_022670650.1 mRNA upstream 1268 40126214 ~ 40140995 (-) True renbp
XM_022670654.1 mRNA upstream 25701 40150647 ~ 40160654 (-) False LOC111192685
XM_022670652.1 mRNA upstream 25701 40150647 ~ 40160654 (-) False LOC111192685
XM_022670655.1 mRNA upstream 25701 40150647 ~ 40159237 (-) False LOC111192685
XM_022670653.1 mRNA upstream 25701 40150647 ~ 40159236 (-) False LOC111192685
TU77816 other downstream 2390 40117789 ~ 40119095 (-) True G57727
TU77630 other downstream 558594 39521544 ~ 39562891 (-) False LOC103030299
TU77868 other upstream 53749 40178695 ~ 40179066 (-) False LOC103037008
trnaw-cca_41 other upstream 481083 40606029 ~ 40606100 (-) True trnaw-cca_41
TU78238 other upstream 1271140 41396086 ~ 41398478 (-) True G58022
TU78780 other upstream 2977924 43102870 ~ 43107623 (-) True G58435
TU78909 other upstream 3557378 43682324 ~ 43682684 (-) True G58537

Expression Profile