RNA id: TU77855


Basic Information

Item Value
RNA id TU77855
length 578
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G57748
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40161527 ~ 40162104 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttataactacggagtttagtggacacaccacggctgcaaggttagactgttgaaggctactgaagactattaaaggctattggaggttattgaaagggttattgggggcagaaatcagtaaaggctggttagataagtgattcacgtcctcgtcctttTCTGCGGTGAAACTgggactagcgctgtcacagtgatgtttattaacgtcattaaaacagattttgtcaggtattgtcttataaatatttacacataacttatatctctcctaaaaagcgtttattttggtcagtaacactcttgtgtttatttactatcagtgtaaattaccagtgtttgctttggcgtggatgtaattagAGGAAACACGTCGTGTCGCTCATTGCTACGTCATCATATTATGGACTAGTTCAGTGCAAGCAACGGAGGggggtatgtgtgtttggacaattagtatttagacattaattcggtattctactgatatttctgttgtttttttaatagaaatatgttttttctttactttacataagtaacaaattaacattgtttttggtgtatttactgtagctg

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0004104 cholinesterase activity molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77825 lncRNA downstream 36581 40121485 ~ 40124946 (-) True G57729
TU77786 lncRNA downstream 71276 40086074 ~ 40090251 (-) True G57704
TU77784 lncRNA downstream 72400 39987484 ~ 40089127 (-) False G57704
XR_002650085.1 lncRNA downstream 194207 39912120 ~ 39967320 (-) False LOC111192684
XR_002650084.1 lncRNA downstream 194207 39912385 ~ 39967320 (-) True LOC111192684
TU77865 lncRNA upstream 880 40162984 ~ 40164280 (-) True G57754
TU77866 lncRNA upstream 912 40163016 ~ 40164280 (-) False G57754
TU77900 lncRNA upstream 93463 40255567 ~ 40255816 (-) True G57782
TU77910 lncRNA upstream 128873 40290977 ~ 40291186 (-) True G57788
TU78104 lncRNA upstream 502416 40664520 ~ 40664764 (-) True G57916
XM_022670654.1 mRNA downstream 873 40150647 ~ 40160654 (-) False LOC111192685
XM_022670652.1 mRNA downstream 873 40150647 ~ 40160654 (-) False LOC111192685
XM_022670655.1 mRNA downstream 2290 40150647 ~ 40159237 (-) False LOC111192685
XM_022670653.1 mRNA downstream 2291 40150647 ~ 40159236 (-) False LOC111192685
XM_022670651.1 mRNA downstream 2292 40150647 ~ 40159235 (-) True LOC111192685
XM_022670929.1 mRNA upstream 3296 40165400 ~ 40179141 (-) True LOC103037008
XM_022670656.1 mRNA upstream 31389 40193493 ~ 40225510 (-) True LOC103039838
XM_022670663.1 mRNA upstream 129685 40291789 ~ 40304589 (-) False LOC103037644
XM_022670661.1 mRNA upstream 129685 40291789 ~ 40304589 (-) False LOC103037644
XM_022670662.1 mRNA upstream 129685 40291789 ~ 40304536 (-) False LOC103037644
TU77816 other downstream 42432 40117789 ~ 40119095 (-) True G57727
TU77631 other downstream 598636 39521544 ~ 39562891 (-) False LOC103030299
TU77868 other upstream 16591 40178695 ~ 40179066 (-) False LOC103037008
trnaw-cca_41 other upstream 443925 40606029 ~ 40606100 (-) True trnaw-cca_41
TU78238 other upstream 1233982 41396086 ~ 41398478 (-) True G58022
TU78780 other upstream 2940766 43102870 ~ 43107623 (-) True G58435
TU78909 other upstream 3520220 43682324 ~ 43682684 (-) True G58537

Expression Profile