RNA id: TU77866


Basic Information

Item Value
RNA id TU77866
length 1265
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G57754
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40162984 ~ 40164280 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTACAATGAGTCACTATTTTTACATAAAGCATTAACATCTAGAGCTAGGGGGAAAAAGCTTGTGAAAATATTGGCACTGAGTCTAACAGTAGGAAGAGATCTGGACTTGTGATGCACTGCAATGAAAAATTAAGCATTTTGCTGAACactgaacattgtttttttttgctggttgtcaactgcttttttgtttgcataAATGAAATTGGCAAGAGATATTTTTCTGCCATTTTTGGATaaattatttctgtttctgaatATTTAGTGAATCTTTACCCTGAACCTGAGCTGCTGTCactattttccatttttaacaTCTTACCAAAATTCTCTCGACCtccaaaaagtgattttttttataaccatGTGCCCCACCTATTGGGAATCTAATCATGTGATCACTAATTCCTCTGTCTATATTTAGTTGGTAGGTAAACTGACCTGTATCTCCTGATGACCTAACCAATGATGGAGCGCTTCTGTGgctttatgttaaaaaaagcaattatgttttttgcaaaatTTCATCAAAAGTTTGAGTTTTTGTCTTCTGTCTCTAAGCAAAACTTAACCATAAAACAGGAGCATTACTCAAATGCTTGCCCATACGTTTAAAATCAAACATGAttattctattaaataaaaattaaatagaattttaaacatttaagtcTTTACAATTCTTCTTATAGTCTTCTTTTGTACACTGTTGTTATATTTTAGCTTCATGGCTTAGTGAAGTACAGTATGAATAATCAACCACCAGCCACAGTTATGTAAATGAATAGGTCTAAATAGATGTTACCAAAGTTGTGCACTAATTATTcttgcacttaaaaaaaaggtattggTTTTAGATATTAGTGGTGATGTCTCTTGTTTTGTAAGCTGTTGAGTGTATGTTTTAGTGTAATGCTGTCACGCACAAGATAATAGTTGCACTTATGGTGCCGAAGGTACGCATAGTGAGTTTGTGAATTAAATAAAGATGATCAAGACTCAGATTGCTTAAATTGTATAAAACTTGTTGGactgtattttacattaattaacataattgtcAGTACAACTATAGAATCAGTtcactttgttttctgtttttagatgGTTATCTTTTTAttgttactttttttaacaacagaCTGATTTTGTTCCACTGATGCCAACTACTACAGACCTCACAAACAGTAGTGAATACAATGGTTACTTTGCTGCAATCAATGATAGATGCAACCAATATAATGTATGTAATTTACAAATGtact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77855 lncRNA downstream 912 40161527 ~ 40162104 (-) True G57748
TU77825 lncRNA downstream 38070 40121485 ~ 40124946 (-) True G57729
TU77786 lncRNA downstream 72765 40086074 ~ 40090251 (-) True G57704
TU77784 lncRNA downstream 73889 39987484 ~ 40089127 (-) False G57704
XR_002650084.1 lncRNA downstream 195696 39912385 ~ 39967320 (-) True LOC111192684
TU77900 lncRNA upstream 91287 40255567 ~ 40255816 (-) True G57782
TU77910 lncRNA upstream 126697 40290977 ~ 40291186 (-) True G57788
TU78104 lncRNA upstream 500240 40664520 ~ 40664764 (-) True G57916
TU78114 lncRNA upstream 577234 40741514 ~ 40748539 (-) True G57925
TU78113 lncRNA upstream 584461 40748741 ~ 40755872 (-) False tprg1l
XM_022670654.1 mRNA downstream 2362 40150647 ~ 40160654 (-) False LOC111192685
XM_022670652.1 mRNA downstream 2362 40150647 ~ 40160654 (-) False LOC111192685
XM_022670655.1 mRNA downstream 3779 40150647 ~ 40159237 (-) False LOC111192685
XM_022670653.1 mRNA downstream 3780 40150647 ~ 40159236 (-) False LOC111192685
XM_022670651.1 mRNA downstream 3781 40150647 ~ 40159235 (-) True LOC111192685
XM_022670929.1 mRNA upstream 1120 40165400 ~ 40179141 (-) True LOC103037008
XM_022670656.1 mRNA upstream 29213 40193493 ~ 40225510 (-) True LOC103039838
XM_022670663.1 mRNA upstream 127509 40291789 ~ 40304589 (-) False LOC103037644
XM_022670661.1 mRNA upstream 127509 40291789 ~ 40304589 (-) False LOC103037644
XM_022670662.1 mRNA upstream 127509 40291789 ~ 40304536 (-) False LOC103037644
TU77816 other downstream 43921 40117789 ~ 40119095 (-) True G57727
TU77631 other downstream 600125 39521544 ~ 39562891 (-) False LOC103030299
TU77868 other upstream 14415 40178695 ~ 40179066 (-) False LOC103037008
trnaw-cca_41 other upstream 441749 40606029 ~ 40606100 (-) True trnaw-cca_41
TU78238 other upstream 1231806 41396086 ~ 41398478 (-) True G58022
TU78780 other upstream 2938590 43102870 ~ 43107623 (-) True G58435
TU78909 other upstream 3518044 43682324 ~ 43682684 (-) True G58537

Expression Profile