RNA id: TU78052


Basic Information

Item Value
RNA id TU78052
length 1230
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G57880
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41072386 ~ 41075376 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCAGCGGCGCTGGACGGAGAAAGCTCGGCCGGGGTCAAGGTCGCATCCCTCAGTGAGGGGACTGGAGCACTGCCCTTCAGTCAGCAGGACAGCGAGAACGCGGGGACCATCGTTCGCCTTCGTGTCCAGCCCGTGCGAAGGATCACAGGTAGAAGAATGACACACAGCTATGATgcTGCAGATGATCTGCCGGACTCCTGACTGCTGAAGTAGAAGAATGATTCAAGCAGTGAAGCCCTGATCATAAGAGCATAAAGTAAGATCTTGTCACCATGCCAAACATTTACAAACCCCATTTATTAATCGGAGATTccaaacacacaatcacacaatacTCCCTAATAAACTGATAAAGCTACATTACAACTGAGATCATATATACACTACCTCACCCCCTACTGCTACTGGAGGCCAGGATGAATTACTTTATCCAACCTGCAAAACTtactaaaggaaaataaatagaataaaagcaacacacacacacatacacactcagtagatatttatgtattttcccACATacactaatataatatatgttgtTAATATACTATTGTAGTGTATATGGTTAATTTAACCTTTAAATCCAGTGACTGAACTAACCCAGTGATTATAATGCGCTAATGAAACCCGACTGAAATAATGGGAACCAAAACAACAGCACAAAAAGCACAGCCCTGTTGTTTCTTCGGACAGCCTGTTTGCCCCCCAAACCCCCCATTTAAAGAAAGCGAGTTTTTTGGGGCGGGTCAGATGATTTTATAGTGAGCAACACctcttttaaagagcaattaacTCTAATTAGACGTGTAAAGAAAGCGCGCTGCTCTTCAGCGCTCCTTCATTGGGGAATCGTTTTCTGCGCCTTAAACGTCTGGCTTTTTTTTACGAGCTCCTGGAAACGGGATGGCCAGGCGAGCGCGCATTTAGAGGCTTTTCTTTTCAGCTTGTGGCCACTTTTCTGCACTTTTAGGGAGGGATGCTGGCCTGGAACACTGAGAGTTCTGGGTAACATCCGCTCTGAGCCTTAATGTTAGGGGCACAGTTACCACCCCCCCAAAACACCACAACCCTCTTTTATCTGTGGTAGGAGAGAGCATGTAGACATGGGATCTTGTCGGGATAAGGATGGGAAAAAAGAGCTGAGATTGTGCATCATATTTGCATgtcatattaacatattaacaacacgttttttctcattgttttatttattttttatttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78026 lncRNA upstream 308904 40762338 ~ 40763482 (+) True G57860
TU78034 lncRNA upstream 319425 40752502 ~ 40752961 (+) True G57867
TU78030 lncRNA upstream 356392 40715510 ~ 40715994 (+) True G57864
TU78004 lncRNA upstream 430256 40639600 ~ 40642130 (+) True G57846
TU77976 lncRNA upstream 444828 40619569 ~ 40627558 (+) True G57825
TU78157 lncRNA downstream 162945 41238321 ~ 41238669 (+) True G57965
TU78159 lncRNA downstream 169761 41245137 ~ 41247541 (+) True G57967
TU78166 lncRNA downstream 177435 41252811 ~ 41255439 (+) True G57972
TU78188 lncRNA downstream 219208 41294584 ~ 41296674 (+) True G57987
TU78281 lncRNA downstream 502945 41578321 ~ 41579048 (+) True G58054
XM_015605502.2 mRNA upstream 323647 40720804 ~ 40748739 (+) True wrap73
XM_007241280.3 mRNA upstream 519235 40543509 ~ 40553151 (+) True LOC103023889
XM_022670672.1 mRNA upstream 541393 40512253 ~ 40530993 (+) True LOC103024512
XM_022670960.1 mRNA upstream 585812 40483010 ~ 40486574 (+) True LOC111192734
XM_015601668.2 mRNA upstream 787085 40258521 ~ 40285301 (+) False LOC103035984
XM_007247918.3 mRNA downstream 229934 41305310 ~ 41315208 (+) True kiaa2013
XM_007247917.3 mRNA downstream 229936 41305312 ~ 41315208 (+) False kiaa2013
XM_022670698.1 mRNA downstream 243349 41318725 ~ 41335582 (+) True LOC103039684
XM_022670700.1 mRNA downstream 243349 41318725 ~ 41335582 (+) False LOC103039684
XM_007247923.3 mRNA downstream 299313 41374689 ~ 41377445 (+) True LOC103032352
TU78022 other upstream 391831 40675040 ~ 40680555 (+) True G57856
trnaw-cca_40 other upstream 472324 40599991 ~ 40600062 (+) True trnaw-cca_40
TU77738 other upstream 1025919 40044653 ~ 40046467 (+) True G57664
TU76991 other upstream 4066588 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 5109067 35956104 ~ 35963319 (+) False G56701
TU78217 other downstream 299443 41374819 ~ 41377430 (+) False LOC103032352
TU78242 other downstream 362651 41438027 ~ 41438911 (+) True G58025
TU78429 other downstream 960574 42035950 ~ 42038982 (+) False ndufa7
TU78480 other downstream 1133345 42208721 ~ 42281970 (+) True G58211
TU78548 other downstream 1501816 42577192 ~ 42626114 (+) True G58256

Expression Profile