RNA id: TU78113


Basic Information

Item Value
RNA id TU78113
length 3949
lncRNA type sense_over
GC content 0.40
exon number 6
gene id tprg1l
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40748741 ~ 40756014 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggaggaggaggagctgctgtCAGAAACAGCGAGGTTCAGCTCGCTCTGTGTTATTATCACTGAACAGGAGATAACTACACTTATCTGTGCGGAGTCGTGCTGTCGGCCGCTGAACTGAGCTCCTCTCCGCTACGATGCTTCAGCTGAACGACACCGTGGAGCCCGAGAGCCCCGGCGCCGCAGTGCTGCACGCGGCCGAGGTGGAGGACGGGGTGGAGGTCGCCTTCACGCCGCCCGCGGGCCACCACAGCCGGGGCTTCGAGGTAGCGGCCGTGGCCTGCTGCTCCCCGCTCCAGAAACTCACGCCCTTCCACGTCCACAACCCCACGATGCAGGCCAAGGTGAAGGACTACTTCGTGTTCAGGGAACTATAGAGCAGGCAGTGAACGATATCCGCACAGTGGCGTTGCCTTCAGAAGATGGAGAGGTTCTCAGTGTGTGGCTCCTGGCAGAAGTTGATCACTGGAATAACGAGAAGGAGAGGCTGGTGCTGATAACAGAAAGGTCTTTGCTGGTTTGCAAATACGACTTCATAAACCTGCAGTGTCAACAAGTTATCAGGATTTCTTTAAATGCTGTGGACACGATTTCCATTGGGGATTTTGAGTTTCCTCCAAAATCTCTCAACAAGAGAGAAGGAAGTGGTATTCGTGTGCAGTGGGATAAACGGCCGAGACCTTCTTTTCTCAATCGCTGGAACCCCTGGTCCACAGACATGCCATATGCCACCTTCACAGAGCACCCCATGGCCCATGCTGATGAAAAGGTGGCTTCTCTCTGCCAGCTTGAGAACTTCAAAACTCAGCTAATTCAGGCTGTGAAAAAGGCCCACAAGGAGTTCCCCATCCCAGGCCGAGCCAACGGAGTGCTGCTGTTGGAGCGGCCCCTCCTGATAGAGAcatatcttggcatcatgtccttCATCAACAACGAGGCCAAACTAGGCTACTCCATGACCAGAGGCAAAATCGGCTTCTAGTTCCGCCTGAGCGTCTGATCTCTGACCACACCCACCTGGCATCTCCACTGACTGGTACTGTTACACTCGAGTAGGTCAAACTAAGTGAACCCCCTTTTGTGCCGCTTGCCAGATTTCAGTGTGGGTGCCCTCTCTCCACCCTGACAGTGTTCATCACTGACTCACTCAGCAGCATGTGCCTGGAAGCATCCGATGCCAACACAGACGCCCTTTTACTGGGTAATGCCATCTGGCTTTTTTTCCTATGTGCCCCACTGTaccaaatgtgtttttataagaGTCTTCTGAAAGTGTGATGATGTGGGATGAGCTGGCTAAAGGTggatggacggacggacggacggacgacTAAGCTTTGTAGGTTGCACAGGTGGGATCGGCCACTTTTATCAGCGTGTTTGGTTAGCAGTTGAAGTAGTATTGTTTACTAGGAGAATTTAAATATCTCAGATAACGATCTGAAACTTTAACaaagagaaaatatattaattgtCAGCAAGAAGGTGAGTAGCCATAATCTCAGTCctcctttattaatttaaaacgCTATGTCTGATGATGTCTATGATGTTCTGAGGCAATGGTTTGGCTCTTTAAAAGTCTGTTTAACTTCTTACTGTGTTACTCTGGAAATATTTACGTCTCCCATAAGTTATACAAAACAGAAATCTGAATACAACATCAAGTTAAGAATTATTAATAGCAGCACTAAACTTGAACTGtactataattattaatttatttattaatctaatGAATCAATTTTCAACTATTGAAATGCTGatttaaaacagtataaagaGTATAAACATTACAAGGCTGCTTCCCAAAAAGTAAATGAAGAATCTTGATGATCCTGATGTTGCTAAAGCGGTTCGTTAAAagtctctgctggactgaagccTAAACTTTTTAGCAAATGAACCAATTGCACTAATCAGATAATAATAGCTTATATTTGTGCAGtaaaacatctgtttttttcaatgtattctggataaaaaaggcaaattgtgtgtttatatctATGTAAAGCACCttaaatttacagtgtttatattttgttGCAATGAATTCACCTTGGCGGTTTAAAATAGGTTTGCTAATAAAGTTGAAATTGGCAATTGTAGCCAATCAGATCAGATCATAGAATTATTAAGTGAACAGTCCAAAATGCAAGTATATGTCTTCGTAAAGGATATCTTACTCAATTACACTGGTGAAATTATTCCAGTTCTGTGCTGCaaacatttttgcaaaaataactCATTCAAGGTATTTGAATTTCCTCGTTAAAAAAAATTTGTAATCACATTTTACTAGTAAAAAGTTCAATTAAAGAGATCTACAGTAGAATTCGGATTCtattaattcagacaattttgTTCGTAATATAATCAAAACTTGATCTGAAAGTATATTTCTGAAATCTGAAAGTATACTTAAGTCGAGGAATAAACATGCATATTAAACGAGTCAAAATGAAACTACACATATCTTCCATTGCTTATGTACTAGTCTAAGTTTATTTACAGATATGTGGATTTGAACTTACTAGTCACAAAGTTCCCaaccatttattattattccatttatttacagtaaacttagattaccgaatttctccagcactaaggcatTAGCAGCAAATatcttcagcagtgctagccagggttagaagcaggctacagaccgatTATACGCCCCTCTGAACATTGAAATAGTAAGCGCAGTAAAATGCTAATGCAACTTCAGCCCCAGTGCTAAAGAACTAAACTCAAAATCCTGAAAAACACTGCAatttagtggagtggctttactgcttcttacaacctgactgataaaactcattaataagaTACACTGGAttaaaggcgcactgacgatttttgggaaaattaaagtattttaagtgcaccttatagtgcgaaaaatacggtattttcATTCACACCAGTTAAAACTAGGTTTTGATCCTTGTGAATAAGGAGAGGCCAAAAttctaaaaaattaaaacattactgttgtaaaaacaaaataactgataatctaataaaaacctCATTAAGAGTTTGTAGCATTTGGCTTAATACTGCacagaaatcttttttttttttttttatcgttttaCAGCGTGTTTTGCGTCCTGCACATGTGGAGATGCCGTGTTAAGAGTTACGAGAATTCCCATTCATATTTCAACCAGTGGTCGCTCTCCTTTTTAATTGTGTGGTGTTGGAGGCGACGTGCATAAATGTATTTGGAGGTCTTCAGGGACAGATTTTTAATAcacagacatttaaaaatatgcgAACCGTCCGGATGGCCATATTCCTgatccgatctgagcaaaaaatctgaattgattAATGAAGCTTGTAATGTGTACGTAGCCGAAGTTTTCGGAGGAGAATACGGGTTCTAACAAGTCTTTGCTTGtatgcactttttatttattcattcttttCTGTCTGCTCACGTTTCAATGCATAGTGACTCGTTTGTACCAAAGTTATGTTAATGGCACTGTTTTGTAGGTGCTCCCTACAAaagtcagtatttttttttgtgtgtgtgtgtgtgtgagagagaaatgttaaaatacaattGCATGTTATCTATGCATGCAGTTTCCTGTGAATAATCTGTTTCATGTATATGGTATTTGTACTCATGGCCTCAGATTACACATTACAGCTTTTAAGCACAGTTTCTCTAGAAATAAGACATTAAGACAGTGAAAGACTATTGtcatttatccattttttctttctgtttttagaaCCAAAATTTTATGTGCCATTATATCACTGTTACATTTTTCCAGTCTTAGATTTAAAAAGGATCTTAAACAGGCTGCAGAGTTGTGCTCTGACTTCCGTTGCCATTACTGCTGATATATCACTCCACTGGGTTTGTACTGTAACAATGATCATgcctaaaactattaaaaacaacTATGGTCTTtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78114 lncRNA downstream 202 40741514 ~ 40748539 (-) True G57925
TU78104 lncRNA downstream 83977 40664520 ~ 40664764 (-) True G57916
TU77910 lncRNA downstream 457555 40290977 ~ 40291186 (-) True G57788
TU77900 lncRNA downstream 492925 40255567 ~ 40255816 (-) True G57782
TU77865 lncRNA downstream 584461 40162984 ~ 40164280 (-) True G57754
TU78108 lncRNA upstream 5623 40761495 ~ 40762172 (-) True G57920
TU78249 lncRNA upstream 693341 41449213 ~ 41452982 (-) True G58031
TU78389 lncRNA upstream 1096717 41852589 ~ 41944829 (-) True G58145
TU78401 lncRNA upstream 1120391 41876263 ~ 41934574 (-) True G58152
TU78395 lncRNA upstream 1144238 41900110 ~ 41903678 (-) True G58149
XM_022670685.1 mRNA downstream 22262 40666471 ~ 40726479 (-) False tp73
XM_015605501.2 mRNA downstream 22264 40669137 ~ 40726477 (-) False tp73
XM_007247904.3 mRNA downstream 28589 40666471 ~ 40720152 (-) True tp73
XM_015605500.2 mRNA downstream 38466 40666471 ~ 40710275 (-) False tp73
XM_022670686.1 mRNA downstream 46129 40666471 ~ 40702612 (-) False tp73
XM_022670696.1 mRNA upstream 7983 40763855 ~ 41072237 (-) True prdm16
XM_022670694.1 mRNA upstream 7983 40763855 ~ 41072237 (-) False prdm16
XM_022670688.1 mRNA upstream 12825 40768697 ~ 41072239 (-) False prdm16
XM_022670692.1 mRNA upstream 12825 40768697 ~ 41072238 (-) False prdm16
XM_022670689.1 mRNA upstream 12825 40768697 ~ 41072238 (-) False prdm16
trnaw-cca_41 other downstream 142641 40606029 ~ 40606100 (-) True trnaw-cca_41
TU77868 other downstream 569675 40178695 ~ 40179066 (-) False LOC103037008
TU77816 other downstream 629646 40117789 ~ 40119095 (-) True G57727
TU77633 other downstream 1185850 39521544 ~ 39562891 (-) False LOC103030299
TU78238 other upstream 640214 41396086 ~ 41398478 (-) True G58022
TU78780 other upstream 2346998 43102870 ~ 43107623 (-) True G58435
TU78909 other upstream 2926452 43682324 ~ 43682684 (-) True G58537
TU79066 other upstream 3612028 44367900 ~ 44368368 (-) True G58649
TU79103 other upstream 3718287 44474159 ~ 44477666 (-) True G58678

Expression Profile