RNA id: TU78217



Basic Information


Item Value
RNA id TU78217
length 906
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC103032352
representative False

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41374689 ~ 41377445 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


actctctcactctctctctctctctcactctcacccatacacacactcctAACTCTCCCACCATGCTCTCCAGCGTCTCCGTGCTCTGCCTGTGctcgctgctgctgctcaaCCTGGCCGGTGCCAAGCCGCTCTCCGGTCTCCAGACTCTGAAAGAGCTTctggaggaggagcaggaggccAATCTGCCTTATTTGGGCACTGAGGACGCGGGGATGGAGCACAGAGGTTCGAGCCGCGAGGAGCCCGCCAATGAGAGCGCGCTGGAGCGCGTGCTGGGGGACCTGCTGGCCGTGTCCAAGCGCTCGTGGAGCCGCTTTAAGAAGGGCGGTCTGCGCAGCTGTTTCGGGGTCAGGCTGGAGCGGATCGGCTCGTTCAGCGGACTGGGATGCTGAGCACCAGGCACAATTGCTACTGGACTAGAGGGCACTGAGACCCTCCTTACTTGAAATTCTTTGGGCAGGgcttatcttctttttttttataaattaattttattttttaaatattataactattataaaGTTTACAGTGGATGTGTATTCAGAGCGCACTGAAGGAAATCCTGCTTTGGATTGACTTGCTTCAAAGGTGTACATCAATTCAGAATTCAGGCCATTAAATTTACCATAAGATGTAAagtcttaatgtaaagtttgttgACGTGATATTATGTTAATATGCGCGATTGAGGCAGGTGAATTAAATGCACTGTTTGTCCAGTGTATGCTCTGTTGtctgagtattatttttttcagtggcaACTGtgtagaaaatgtaaataacttttttttttgtaattcttttCTTTGTCTATCTGCTGCTTTTTACTGTTTCAtcaatgtgtgtatttatttcttGTCCAAATCTGTTCATGTCATAGAGTGTATGTGGAAGcgaaataaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU78188 lncRNA upstream 78145 41294584 ~ 41296674 (+) True G57987
TU78166 lncRNA upstream 119380 41252811 ~ 41255439 (+) True G57972
TU78159 lncRNA upstream 127278 41245137 ~ 41247541 (+) True G57967
TU78157 lncRNA upstream 136150 41238321 ~ 41238669 (+) True G57965
TU78052 lncRNA upstream 299443 41072386 ~ 41075376 (+) True G57880
TU78281 lncRNA downstream 200891 41578321 ~ 41579048 (+) True G58054
TU78306 lncRNA downstream 313691 41691121 ~ 41691388 (+) True G58074
TU78335 lncRNA downstream 380853 41758283 ~ 41763578 (+) True G58096
TU78357 lncRNA downstream 632616 42010046 ~ 42030054 (+) True G58114
TU78430 lncRNA downstream 658520 42035950 ~ 42053889 (+) True ndufa7
XM_022670698.1 mRNA upstream 39237 41318725 ~ 41335582 (+) True LOC103039684
XM_022670700.1 mRNA upstream 39237 41318725 ~ 41335582 (+) False LOC103039684
XM_007247918.3 mRNA upstream 59611 41305310 ~ 41315208 (+) True kiaa2013
XM_007247917.3 mRNA upstream 59611 41305312 ~ 41315208 (+) False kiaa2013
XM_015605502.2 mRNA upstream 626080 40720804 ~ 40748739 (+) True wrap73
XM_015605497.2 mRNA downstream 12189 41389619 ~ 41390496 (+) True nppa
XM_007247924.3 mRNA downstream 18711 41396141 ~ 41398105 (+) True LOC103032860
XM_007247925.3 mRNA downstream 63269 41440699 ~ 41452963 (+) True mthfr
XM_022670704.1 mRNA downstream 408210 41785640 ~ 41903713 (+) True plch2
XM_007247929.2 mRNA downstream 533318 41910748 ~ 41934572 (+) True LOC103035003
TU78022 other upstream 694264 40675040 ~ 40680555 (+) True G57856
trnaw-cca_40 other upstream 774757 40599991 ~ 40600062 (+) True trnaw-cca_40
TU77738 other upstream 1328352 40044653 ~ 40046467 (+) True G57664
TU76991 other upstream 4369021 37005273 ~ 37005798 (+) True G57066
TU76490 other upstream 5411500 35956104 ~ 35963319 (+) False G56701
TU78242 other downstream 60597 41438027 ~ 41438911 (+) True G58025
TU78429 other downstream 658520 42035950 ~ 42038982 (+) False ndufa7
TU78480 other downstream 831291 42208721 ~ 42281970 (+) True G58211
TU78548 other downstream 1199762 42577192 ~ 42626114 (+) True G58256
trnar-ucg_3 other downstream 1461408 42838838 ~ 42838910 (+) True trnar-ucg_3

Expression Profile