RNA id: TU78242


Basic Information

Item Value
RNA id TU78242
length 885
RNA type TUCP
GC content 0.53
exon number 1
gene id G58025
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41438027 ~ 41438911 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTCTGCCTGGCATCTCTGCCTGCCGCACCTCCTCCAGTGCACTTGCGGTCAGCTGCAGGGTCGTCAGCTGGTGCCACCGTTCATAGATGTTTCGCCCCCAGACCAGTACACCTCGCGGTGGGGGGGCAGTGGCTCTTATGGGGACGTCTCCCTGCCACCCCCTGCAGCTGACCTCATTGGGGTGTTGAACCCCAATTTGAATCCTTTCTCCGTAGCCAGAGCCAATAGCTTGCTTTTTCCGCCTCTTCTGCCAACTCCTTGACTTGCTTTTTTCAGCCTTGTCCCGGTCATCCCAAGTGTCACGAAGCAGCTGCATTGTTGATTTCCCCACAAAGCCCCTACAACCAACTTCCACCGGGTGGATGGACGTGGTCCAGCCGCCTTCTCTGCACTCTGCTGCCAGGTCAGAGTACTTGAGCCGCTTATGCTCATATGCTGCCAACATTCCCTCCTCCCATGGCACTGTAAGCTCGATGATGAGAACCTTTTTCGCAGCCCTTGACCACATCACCACATCTGGTCTCAATGTTGTTTGGGTGATCTCGGATGGGAAAATAAGTTTAGTACCCAGATCGACACGCATTTCCCATCCCTTCCCAGGAGAAAGCAGGCATGTAGGTCTTCCCGCTGCTGTCTTCTGCACACCCTCTCCTGGTTTAACGAATGGGATCTTTGGACGAGATACTTCTGGGAAGATGTTTGCCCTGCTCTCCTCTAACTGCTCTGCCAACTTTCTCAGCACTTGGTTGTGTCGCCATCTAAGTCGACCCTGtgacagagctacactacaCCCAGATAGTATGTGCTGGAGACTTACATTAAGTTTGCTACACAGAGGGCACTTCTCCTCACTTCCAAACCATTGGGAGAGGTTTTGGGGGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78188 lncRNA upstream 141353 41294584 ~ 41296674 (+) True G57987
TU78166 lncRNA upstream 182588 41252811 ~ 41255439 (+) True G57972
TU78159 lncRNA upstream 190486 41245137 ~ 41247541 (+) True G57967
TU78157 lncRNA upstream 199358 41238321 ~ 41238669 (+) True G57965
TU78052 lncRNA upstream 362651 41072386 ~ 41075376 (+) True G57880
TU78281 lncRNA downstream 139410 41578321 ~ 41579048 (+) True G58054
TU78306 lncRNA downstream 252210 41691121 ~ 41691388 (+) True G58074
TU78335 lncRNA downstream 319372 41758283 ~ 41763578 (+) True G58096
TU78357 lncRNA downstream 571135 42010046 ~ 42030054 (+) True G58114
TU78430 lncRNA downstream 597039 42035950 ~ 42053889 (+) True ndufa7
XM_007247924.3 mRNA upstream 39922 41396141 ~ 41398105 (+) True LOC103032860
XM_015605497.2 mRNA upstream 47531 41389619 ~ 41390496 (+) True nppa
XM_007247923.3 mRNA upstream 60582 41374689 ~ 41377445 (+) True LOC103032352
XM_022670698.1 mRNA upstream 102445 41318725 ~ 41335582 (+) True LOC103039684
XM_022670700.1 mRNA upstream 102445 41318725 ~ 41335582 (+) False LOC103039684
XM_007247925.3 mRNA downstream 1788 41440699 ~ 41452963 (+) True mthfr
XM_022670704.1 mRNA downstream 346729 41785640 ~ 41903713 (+) True plch2
XM_007247929.2 mRNA downstream 471837 41910748 ~ 41934572 (+) True LOC103035003
XM_007247931.3 mRNA downstream 471927 41910838 ~ 41934572 (+) False LOC103035003
XM_022670705.1 mRNA downstream 509108 41948019 ~ 41977048 (+) True dpp9
TU78217 other upstream 60597 41374819 ~ 41377430 (+) False LOC103032352
TU78022 other upstream 757472 40675040 ~ 40680555 (+) True G57856
trnaw-cca_40 other upstream 837965 40599991 ~ 40600062 (+) True trnaw-cca_40
TU77738 other upstream 1391560 40044653 ~ 40046467 (+) True G57664
TU76991 other upstream 4432229 37005273 ~ 37005798 (+) True G57066
TU78429 other downstream 597039 42035950 ~ 42038982 (+) False ndufa7
TU78480 other downstream 769810 42208721 ~ 42281970 (+) True G58211
TU78548 other downstream 1138281 42577192 ~ 42626114 (+) True G58256
trnar-ucg_3 other downstream 1399927 42838838 ~ 42838910 (+) True trnar-ucg_3
TU78895 other downstream 2221871 43660782 ~ 43661647 (+) True G58529

Expression Profile