RNA id: TU78542


Basic Information

Item Value
RNA id TU78542
length 495
lncRNA type sense_over
GC content 0.42
exon number 2
gene id LOC103040535
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 42534901 ~ 42576703 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTctttgactttttatttttgagctTGCCTTTGTTAAAATTCATGTCTGAATacataaaaagttatttaaaaatgtcaaacTGACCAGATATCAAATTACTTCTTTTAAAAACCATTTGGTGTAAAAACTTAAGACCGATTTAGAAAAACATCTGCTGTTTCCCCAAAACTCTTAGCTGTCACATAAAAAGAATGGAAAAGAAAACAGGTCTGCATAGATTCTGCAGGCAATCGGTGGTAATCTGGTCAAACACATGTTGCAAGCTTAGACGATCGTCAGGTCAAATCTGGTTCTTATTGCTCAGATCTTGGATGTTTCTTCTTCTTGTTGTTAATGGCCAGGCCCTGTTGTCGCACACACAAAGACGGGCTTTAACACTGACCCCAGAAACCTCCCACCGAGCCCAAAACTCTTCTTGCACTCCAGCTGAAAGAGCCCTATTGTGTGGAGGGGACAGGGTCCAAGGCATGATGGGCGGGGAAGGGGGGTAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650088.1 lncRNA upstream 143735 42366132 ~ 42422813 (+) True LOC111192688
TU78497 lncRNA upstream 159956 42406197 ~ 42406592 (+) True G58227
TU78462 lncRNA upstream 435514 42128190 ~ 42131034 (+) True G58201
TU78430 lncRNA upstream 512659 42035950 ~ 42053889 (+) True ndufa7
TU78434 lncRNA upstream 515439 42050141 ~ 42051109 (+) True G58177
TU78562 lncRNA downstream 34946 42611649 ~ 42613559 (+) True G58265
TU78564 lncRNA downstream 51918 42628621 ~ 42649533 (+) True G58267
TU78566 lncRNA downstream 53635 42630338 ~ 42649265 (+) False G58267
TU78565 lncRNA downstream 63349 42640052 ~ 42649533 (+) False G58267
TU78797 lncRNA downstream 593438 43170141 ~ 43172830 (+) True G58444
XM_007247948.3 mRNA upstream 34030 42431495 ~ 42532518 (+) False espn
XM_007247953.3 mRNA downstream 22638 42599341 ~ 42611018 (+) True LOC103040839
XM_015605503.2 mRNA downstream 22641 42599344 ~ 42611018 (+) False LOC103040839
XM_022670718.1 mRNA downstream 22641 42599344 ~ 42611018 (+) False LOC103040839
XM_007247956.3 mRNA downstream 187300 42764003 ~ 42767588 (+) True angptl7
XM_007247960.3 mRNA downstream 286250 42862953 ~ 42873055 (+) True ogg1
TU78480 other upstream 284578 42208721 ~ 42281970 (+) True G58211
TU78429 other upstream 527566 42035950 ~ 42038982 (+) False ndufa7
TU78242 other upstream 1127637 41438027 ~ 41438911 (+) True G58025
TU78217 other upstream 1189118 41374819 ~ 41377430 (+) False LOC103032352
TU78022 other upstream 1885993 40675040 ~ 40680555 (+) True G57856
TU78548 other downstream 489 42577192 ~ 42626114 (+) True G58256
trnar-ucg_3 other downstream 262135 42838838 ~ 42838910 (+) True trnar-ucg_3
TU78895 other downstream 1084079 43660782 ~ 43661647 (+) True G58529
XR_002650089.1 other downstream 2002423 44579126 ~ 44583918 (+) False LOC103028384
TU79126 other downstream 2018530 44595233 ~ 44600960 (+) True G58696

Expression Profile