RNA id: TU78562


Basic Information

Item Value
RNA id TU78562
length 1840
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G58265
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 42611649 ~ 42613559 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ataaactaaacacatactttgcgctgcacagcggggtggtgttctcggagatgggagaacaggttttgacgtatgtccacctttagctgtgactttacggccacattgattacaaatcggataaccatcctgcgttcggcgggtatccgaaatagtcccacactgctgatttagtttagccttttttaggcggacggagatttgtttagtctgatgcactttctgttgttctcaccgctgtgtgccgAGTAGCTGAAACGGAcaagagttgcgcatgcgcggtgGAGTTTCTCTCTCCgcctggcttgcgttttaccggtaataagcaaacacacacggtatgataaccgtgcattttaataccatggtataccgtgaaaccggttaccgctgcaaccctaaatGCCACTGTAGTGAAAGTAGTGAACCACTgacagctaaataaataaataaataaataaataaataaatatagatcTGTATGATGCTGCTGTAACTTTAAGGGTACATTTGGAACATGTTTGGACTTTGTaataaaaagaaggaaaaaaatgtatatattttcatactGACAGTGTATCAACCTAAAGAAAAGCCCTAATAAATGTTGATTTGCAGAGTAATTATTAATTTGGAGTAACTAAcggtcattgtttttttttttttatactaaacaAATGTAGGTTATTTTACCAATGTAAACAAAAGGAAAGGAAATGGGTTAggaaaatgttgggtttaataCCTGAAGTAAGATTGTCAATTATCTACAGTATACAATGTATAGCTCCTGGAGTTAATTGCTCTGACAGGACCATAAATGATACATGGGGTTAAACAAACCATCCTTACCGAGTTTAacaaacatgcatttttttgcTACTGATGTTTTCATATCAGATTATTGAGCTTTATTCTGTTCCGTAAGTTACTGGACCTGCCCGTCTATGAGGATGAAGCTTTTAACAGCACTTCAATAAAGCAGACATCCAGAAGAGAAACAACAAACTAAGCCAAACTACATAAAAATGcaagaccctgtttacaccccTCACTTTATGCATTTATCAGGATTTAGGGCTACACAGAATTGTGGGGAGAAAAATGCAATTGTATTTCTtctgcacattgcAATATTAAAGGTCCCATTCCATCgtcttttcattcattttcattcaaaATGTCTAGTTTGTGAGAagttttttgggaaaacagtgctcaggtgtttctatttagccctgctttagttcactgaattcGTGATCTCTGATGAAGGACAGGTAtttgggctcttgctcatgaatattataTGAATATCATAATATAATGAGTTGATCCGTGTTACAATCGACCCACTGCACAATCTTGTACACTTAGCACTCAGACAACACATACCAAGAAGTGGCGGCCAGGTGAGAAGAGTGTACTCAATCGGAAATGCTTTAGAGAGGATAAGTGCTCGAAACTGTGCAAAACATCTACAAGGCTTCACCAGAAAATACCAGATTTTTGCAAACAAATGTTATTGCAAATCTTTTATGGGGTTTCGTTTTAAATTTATGAGGTAAACACAATGGGTAAATGTGTCTCAATCAAGTTCCAAGTCACCACTAATGATTCACAAATCACAGTTGTCTGGTGGCCCACCCGTCTGTCTACCAACTGACTCAACCCAACCGGCGAGATGAACTTTGTCATGCTTTACAGCCTGTCAAAATATTTGCATTATCAACGTACTTTGCAATACAGGGGCATAATCTTAAGATTGCCCATATTTTAGCCTTTTTAGAATATGTGTTCTTGAggacattaaataataaaaatatttcacagaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78542 lncRNA upstream 34946 42566548 ~ 42576703 (+) False LOC103040535
TU78544 lncRNA upstream 37472 42566548 ~ 42574177 (+) False LOC103040535
TU78537 lncRNA upstream 41171 42566548 ~ 42570478 (+) False LOC103040535
TU78538 lncRNA upstream 41171 42566548 ~ 42570478 (+) False LOC103040535
TU78539 lncRNA upstream 41171 42566548 ~ 42570478 (+) False LOC103040535
TU78564 lncRNA downstream 15062 42628621 ~ 42649533 (+) True G58267
TU78566 lncRNA downstream 16779 42630338 ~ 42649265 (+) False G58267
TU78565 lncRNA downstream 26493 42640052 ~ 42649533 (+) False G58267
TU78797 lncRNA downstream 556582 43170141 ~ 43172830 (+) True G58444
TU78809 lncRNA downstream 707197 43320756 ~ 43326039 (+) True G58454
XM_007247953.3 mRNA upstream 631 42599341 ~ 42611018 (+) True LOC103040839
XM_015605503.2 mRNA upstream 631 42599344 ~ 42611018 (+) False LOC103040839
XM_022670718.1 mRNA upstream 631 42599344 ~ 42611018 (+) False LOC103040839
XM_007247951.3 mRNA upstream 45021 42534901 ~ 42566628 (+) False LOC103040535
XM_022670715.1 mRNA upstream 45021 42534910 ~ 42566628 (+) True LOC103040535
XM_007247956.3 mRNA downstream 150444 42764003 ~ 42767588 (+) True angptl7
XM_007247960.3 mRNA downstream 249394 42862953 ~ 42873055 (+) True ogg1
XM_022670720.1 mRNA downstream 301928 42915487 ~ 42947000 (+) True LOC103045241
XM_007247968.3 mRNA downstream 432920 43046479 ~ 43057716 (+) True pcbp2
XM_007247969.3 mRNA downstream 433244 43046803 ~ 43057716 (+) False pcbp2
TU78480 other upstream 329679 42208721 ~ 42281970 (+) True G58211
TU78429 other upstream 572667 42035950 ~ 42038982 (+) False ndufa7
TU78242 other upstream 1172738 41438027 ~ 41438911 (+) True G58025
TU78217 other upstream 1234219 41374819 ~ 41377430 (+) False LOC103032352
TU78022 other upstream 1931094 40675040 ~ 40680555 (+) True G57856
trnar-ucg_3 other downstream 225279 42838838 ~ 42838910 (+) True trnar-ucg_3
TU78895 other downstream 1047223 43660782 ~ 43661647 (+) True G58529
XR_002650089.1 other downstream 1965567 44579126 ~ 44583918 (+) False LOC103028384
TU79126 other downstream 1981674 44595233 ~ 44600960 (+) True G58696
TU79125 other downstream 1982363 44595922 ~ 44600960 (+) False G58696

Expression Profile