RNA id: TU78809


Basic Information

Item Value
RNA id TU78809
length 242
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G58454
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 43320756 ~ 43326039 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCAAACTCCTCGGGTGTCACTTTGAGCACGTCAAACACCACCGCATCATAGCTCTTAGCAGAGTCCAAACTCCGCCCATCCAGAGACTCAGAACTGCTGCTGTCCTGCctGGGTGGTGGCGGAGGTGATGCTGATGTTGGCAGGGAGCCCATTCCTCCTGTACATGCTCTCAGGCAGATGAGAACCCAGCAGACTCAGCTGCTCAGTGAGGAGCTCTCAGCCATCcctgcaaaacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78797 lncRNA upstream 147926 43170141 ~ 43172830 (+) True G58444
TU78564 lncRNA upstream 671223 42628621 ~ 42649533 (+) True G58267
TU78565 lncRNA upstream 671223 42640052 ~ 42649533 (+) False G58267
TU78566 lncRNA upstream 671491 42630338 ~ 42649265 (+) False G58267
TU78562 lncRNA upstream 707197 42611649 ~ 42613559 (+) True G58265
TU78815 lncRNA downstream 20346 43346385 ~ 43349871 (+) True G58460
TU78914 lncRNA downstream 382677 43708716 ~ 43708986 (+) True G58542
TU78939 lncRNA downstream 686091 44012130 ~ 44012825 (+) True G58564
TU78970 lncRNA downstream 766885 44092924 ~ 44093145 (+) True G58577
TU78980 lncRNA downstream 854186 44180225 ~ 44180508 (+) True G58587
XM_007247977.2 mRNA upstream 41159 43242755 ~ 43279597 (+) True LOC103022051
XM_015605509.2 mRNA upstream 41159 43242755 ~ 43279597 (+) False LOC103022051
XM_007247973.3 mRNA upstream 181641 43109425 ~ 43139115 (+) True LOC103047068
XM_007247975.3 mRNA upstream 181641 43109431 ~ 43139115 (+) False LOC103047068
XM_007247972.3 mRNA upstream 184438 43109418 ~ 43136318 (+) False LOC103047068
XM_022670962.1 mRNA downstream 1109819 44435858 ~ 44446503 (+) True LOC111192736
XM_022670964.1 mRNA downstream 1109819 44435858 ~ 44439670 (+) False LOC111192736
XM_022670963.1 mRNA downstream 1111026 44437065 ~ 44446503 (+) False LOC111192736
XM_022670932.1 mRNA downstream 1122393 44448432 ~ 44529452 (+) True LOC103030075
XM_007235865.3 mRNA downstream 1209830 44535869 ~ 44540982 (+) True LOC103027244
trnar-ucg_3 other upstream 481846 42838838 ~ 42838910 (+) True trnar-ucg_3
TU78548 other upstream 694642 42577192 ~ 42626114 (+) True G58256
TU78480 other upstream 1038786 42208721 ~ 42281970 (+) True G58211
TU78429 other upstream 1281774 42035950 ~ 42038982 (+) False ndufa7
TU78242 other upstream 1881845 41438027 ~ 41438911 (+) True G58025
TU78895 other downstream 334743 43660782 ~ 43661647 (+) True G58529
XR_002650089.1 other downstream 1253087 44579126 ~ 44583918 (+) False LOC103028384
TU79126 other downstream 1269194 44595233 ~ 44600960 (+) True G58696
TU79125 other downstream 1269883 44595922 ~ 44600960 (+) False G58696
XR_002650090.1 other downstream 1526741 44852780 ~ 44866838 (+) False LOC103029434

Expression Profile