RNA id: TU79086


Basic Information

Item Value
RNA id TU79086
length 320
lncRNA type sense_over
GC content 0.45
exon number 5
gene id LOC111192736
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44435858 ~ 44446503 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAAGTCACTCCAGTCATTCCATCAACatcagaaagaaagaagGCTGAGAACCAGCATAAGACCGACACTGCAAAGACCTCAGAAAGATCAGGACCATCTTCAAAGAGCGGTCAGAGAAACACAGCAGAGCTTCATTATAATGCTGCAACTGCAAGAAATCCACAGCAAGAGCAACAGGACTCTAACAATTCTGAAGAAGAATTTGTGGACGTTTCTGAAGATTTTATCCCTGAAACGGCAACTGTGATAAAAGGTACACCTTCCACTGATTTCTCTTACCCCTGTGGACCCAGAGAACAGCAGGGTGTACACCCATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79077 lncRNA upstream 6574 44429972 ~ 44433476 (+) True G58658
TU79016 lncRNA upstream 13075 44366384 ~ 44426975 (+) True G58610
TU79013 lncRNA upstream 14980 44340974 ~ 44425070 (+) True G58609
TU79007 lncRNA upstream 39510 44324693 ~ 44400540 (+) True G58607
TU79005 lncRNA upstream 107620 44323495 ~ 44332430 (+) True G58606
TU79121 lncRNA downstream 132599 44579080 ~ 44583918 (+) True LOC103028384
TU79218 lncRNA downstream 327781 44774262 ~ 44774597 (+) True G58768
TU79250 lncRNA downstream 356345 44802826 ~ 44805244 (+) False G58788
TU79243 lncRNA downstream 356941 44803422 ~ 44810711 (+) False G58788
TU79254 lncRNA downstream 356941 44803422 ~ 44810711 (+) True G58788
XM_022670964.1 mRNA upstream 380 44435858 ~ 44439670 (+) False LOC111192736
XM_007247977.2 mRNA upstream 1160453 43242755 ~ 43279597 (+) True LOC103022051
XM_015605509.2 mRNA upstream 1160453 43242755 ~ 43279597 (+) False LOC103022051
XM_007247973.3 mRNA upstream 1300935 43109425 ~ 43139115 (+) True LOC103047068
XM_022670932.1 mRNA downstream 1951 44448432 ~ 44529452 (+) True LOC103030075
XM_007235865.3 mRNA downstream 89388 44535869 ~ 44540982 (+) True LOC103027244
XM_007235867.3 mRNA downstream 108932 44555413 ~ 44567511 (+) True LOC103027865
XM_007235870.2 mRNA downstream 189245 44635726 ~ 44692350 (+) True dtx1
XM_022670934.1 mRNA downstream 391948 44838429 ~ 44839196 (+) True LOC111192718
TU78895 other upstream 778403 43660782 ~ 43661647 (+) True G58529
trnar-ucg_3 other upstream 1601140 42838838 ~ 42838910 (+) True trnar-ucg_3
TU78548 other upstream 1813936 42577192 ~ 42626114 (+) True G58256
TU78480 other upstream 2158080 42208721 ~ 42281970 (+) True G58211
TU78429 other upstream 2401068 42035950 ~ 42038982 (+) False ndufa7
XR_002650089.1 other downstream 132645 44579126 ~ 44583918 (+) False LOC103028384
TU79126 other downstream 148752 44595233 ~ 44600960 (+) True G58696
TU79125 other downstream 149441 44595922 ~ 44600960 (+) False G58696
XR_002650090.1 other downstream 406299 44852780 ~ 44866838 (+) False LOC103029434
TU79487 other downstream 1343230 45789711 ~ 45790154 (+) True G58971

Expression Profile