RNA id: XM_022670744.1


Basic Information

Item Value
RNA id XM_022670744.1
length 7200
RNA type mRNA
GC content 0.48
exon number 45
gene id snrnp200
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44586306 ~ 44622074 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACTGTTTGCGTGACATGCTGCGCGCGTCGTGCGTGCGTTGTGAGTCTTTTGTGCGGGAGAGCAGAAGCAGCAGAACCCGCAACTTTTCTTCTATACCGTACTGCTATCACCCGGCCCCGCAGCTTCCCTCAGCACCCCGCAGCTCCCCGCAGGCCTGTAGCTGTAGCTGTGTGAGCGGTTAGCCCGGGCTCTGAGGATTAGCCGGGGCTTACACTAGAGCTGCAGGATGGCGGATGTTACAGCGCGTAGTCTGCAGTATGAGTATAAAGCGAACTCGAACTTGGTTTTGCAAGCTGATCGCTCTCTCATTGACCGCACTCGCCGAGATGAACCTACAGGCGAGGTGTTGTCTTTGGTTGGGAAACTGGAAGGGACCAAAATGGGAGACAAGAGTCAACGAACGAAGCCACAAATGTTGGAAGAAAGGAGGGCAAAGAGAAGAAAGCGAGATGAAGACAGACATGACATTAacaaaatgaaaggatttaCCCTGCTGTCAGAAGGAATTGATGAGATGGTGGGTATCGTATACAAGCCAAAGACCAAGGAGACCAGAGAAACGTATGAAATCCTCCTCAGCTTCATTCAGGCTGCTCTTGGAGACCAGCCAAGAGACATTCTGTGTGGTGCTGCAGATGAGGTGTTAGCTGTTCTTAAGAATGAGAAGATGAGGGATAAGGAAAGGAGGCGGGAAGTTGAGCAATTGCTTGGACCTACAGATGACACACGCTACCATGTCCTGGTCAACTTGGGCAAGAAGATCTCTGACTATGGAGGGGACAAAGAACTCCAAAATATGGATGAAAACATAGATGAAACCTATGGAGTAAATGTACAGTTTGAGTCTGATGAGGAGgAAGGTGATGAAGACCAGTATGGAGAGGTGCGGGAGGAAGGTTCTGATGACAGCGAGGGAGAGGAAGCAGATGTGGGATGCACACTGTCTGCTAATttGGGGACTGCAGGAGATGTGATGACCACCAAAAAGAAAGACCTTCACCCTAGAGACATTGATGCTTTTTGGCTTCAGAGGCAGCTCAGCCGTTTCTATGATGACGCTATTGTGTCTCAGAAGAAAGCTGATGAGGTTTTGGAGATTCTCAAGACCGCTAGTGATGACCGAGAATGTGAGAATCAGTTGGTGCTTCTGCTGGGTTTTAATACCTTTGACTTCATTAAGGTGCTACGCCAGCACAGGCGCATGATCCTCTACTGCACCATGTTGGCCAGTGCACAAAGTGAAGCGGAAAAGGAGAAGATAATTGCCAAAATGGAAGCAGATCAAGACTTGTCCAAAGTTCTTTACCAGCTGCAGGAAACTGAAAAGGAAGACATTATTCGAgaagaaAGATCTCGCAGGGAAAGACTGAGAAAGTCTCGAGTGGATGATATGGAGTCTATGGACATTGATCGCTCAGAGTCTGTGGCAGCACGACAGCTTCTCGATCTCGAGGATCTTGCCTTCACTCAAGGAAGCCACTTTATGGCCAACAAGCGCTGCCAGCTTCCTGACGGTTCCTTCCGTAAACAAAGAAAAGGCTACGAGGAGGTGCACGTACCTGCGCTTAAACCCAAGCCTTTTTCTGATGATGAGACTCTTGTGGCTGTTGAGAAGATGCCGAAATACGCCCAGGCTGCATTTGAAGGGTTCAAAACATTGAACCGCATTCAGAGCAAACTGTTCAAAACTACTATGGAGACAGATGGGAACCTGTTGGTTTGCGCTCCCACTGGAGCTGGTAAAACCAATGTTGCTCTGATGGCCATGCTCAGAGAGATTGGCAAGCATATCAACATGGATGGCACCATTAATGTGGATGATTTCAAAATCATCTACATTGCTCCTATGCGTTCACTGGTACAGGAAATGGTGGGCAGCTTTGGCAAGCGTTTGGCCAGTTATGGGATCACAGTGTCTGAGCTGACTGGTGATCACCAGCTCTGCAAGGAGGAGATCAATGCCACGCAGATCATTGTGTGTACACCTGAGAAATGGGACATCATCACCCGCAAGGGAGGGGAGCGTACATACACTCAGCTAGTGCGCctcatcattattGATGAGATTCACTTGCTACATGATGACCGTGGACCAGTATTGGAATCTCTCATTGCTCGCACCATCCGAAACGTGGAGCTCACCCAAGAGGAGGTGCGCCTTATTGGCCTCAGTGCCACGCTGCCGAACTATGAAGATGTGGCCACATGTCTCCGTGTGGACCCTGCTAAGGGCCTGTTCTACTTTGACAACAgTTTCCGCCCTGTGCCACTGGAGCAGACGTACGTGGGAATCACAGAGAAAAAGGCAATCAAACGCTTTCAAATCATGAATGAAATCGTCTATGAGAAGATCATGGAGCATGCGGGAAAGAACCAGGTTCTGGTATTTGTACACTCGCGTAAGGAGACTGGAAAGACTGCGAGGGCAATAAGGGATATGTGTCTGGAGAAAGATACTCTGGGGCTGTTCCTTCGTGAGGGTTCTGCTTCCACTGAGGTCCTGAGGACAGAGGCAGAGCAGTGCAAGAATCTGGAGCTAAAAGATCTCTTGCCGTATGGTTTTGCCATCCATCACGCTGGCATGACCAGAGTAGACCGAACTCTGGTGGAAGATCTGTTTGCTGATCGTCATATTCAggTACTGGTGTCTACCGCCACATTGGCCTGGGGAGTAAACTTGCCTGCCCACACTGTCATCATCAAAGGCACTCAGGTGTACAGTCCAGAGAAAGGAAGGTGGACTGAGCTGGGAGCTCTGGACATTCTGCAGATGCTTGGGCGCGCTGGCCGACCGCAGTATGATACAAAAGGAGAGGGCATTTTGATCACATCCCATGGAGAGCTGCAGTATTACTTGTCTCTGCTCAACCAGCAGCTGCCTATAGAAAGCCAGATGGTGGGGAAACTTCCCGACATGCTCAATGCTGAGGTGGTGCTGGGCAATGTTCAGAATGTGAAGGACGCTGTGAACTGGATTGGTTATACTTATCTGTATGTACGGATGCTACGTAACCCCACACTCTATGCGGTTTCCCATGATGAACGCAGCACTGATCCTTACCTGGAGCAGCGCAGGATGGACCTGGTGCACACAGCTGCCACTGTGCTGGAGAAGAACAATTTGGTCAAATATGACAAGAGGAGTGGCAGTTTCCAGGTGACCGACTTGGGACGGATTGCCAGTCACTTCTACATTACTCATGAGTCCATTATGACCTACAACCAGCTACTGAAACCTACACTTAGTGAAATCGAGCTCTTCAGGGTGTTCTCCCTCTCCTCTGAGTTCAGGAACATCACAGTCAGAGAGgaGGAAAAACTGGAGCTACAGAAGCTACTGGAGAGGGTGCCCATTCCCGTGAAGGAAAGTATAGAGGAGCCCAGTGCTAAGATAAATGTTCTGCTGCAGGCCTACATCTCCCAACTAAAACTAGAGGGCTTTGCTCTAATGGCTGACATGGTTTATGTCACACAGAGTGCTGGTCGATTGATGAGGGCCATTTTTGAGATTGTTCTTGGTCGAGGCTGGGCTCAGCTCACAGACAAAACAATGAACCTCTGCAAAATGATCGACAAAAGAATGTGGCAGTCCATGTCTCCTCTGCGTCAGTTCCGCAAGCTTCCAGAAGAAGTCATCAAGAAGATTGAAAAGAAGAGCTTTCCCTTTGAGCGTCTTTATGATCTCAATCACAATGAAATTGGTGAGCTGATCCGCATGCCAAAAATGGGGAAAACCATCCACAAGTATGTGCACCAGTTTCCAAAACTGGACCTTGCAGTTCACCTTCAGCCCATCACTCGCTCCACCCTGAAGGTGGAGCTCACCATCACTCCAGACTTTCAGTGGGATGATAAGGTGCATGGATCCTCTGAGGCGTTTTGGATCTTGGTGGAGGATGTTGACAGTGAGGTGATTCTGCACCATGAATACTTCCTGCTTAAGGCCAAATATGCTCAGGATGAACACTTGATCACCTTTTTTGTGCCCGTGTTCGAGCCGCTGCCTCCACAGTACTTCATCAGAGTCGTCTCAGACCGCTGGCTTTCTTGTGAAACTCAGCTGCCAGTGTCTTTCCGTCACCTCATCCTCCCAGAGAAATATCCTCCTCCCACTGAGctgctggatctgcagcctctgCCAGTATCTGCCCTGAGAAATGCTGCGTTTGAGAGCCTCTATCAGAACAAGTTCCCCTTTTTCAACCCCATTCAGACACAAGTGTTCAATGCAGTTTACAACAGTGATGACAATGTGTTTGTGGGAGCCCCTACTGGCAGTGGAAAGACAATCTGTGCAGAGTTTGCCATTCTGAGGATGCTGCTACATAACACAGAAGGACGCTGTGTCTACATCACGCCCATGGAGGCTCTGGCTGAACAGGTGTTTGTGGATTGGCACCAGAAGTTCCAAGAAGCACTGAACAAAAAAGTGGTCATACTGACTGGAGAAACCAGCACTGACCTAAAGCTGCTGGGAAAAGGAGACATCATCATCAGCACCCCGGACAAGTGGGACATCCTGTCCCGTCGATGGAAGCAGAGGAAGAATGTGCAGAATGTCAGCCTCTTCATTGTGGATGAGACTCACCTCATTGGAGGAGAGAATGGGCCTGTGCTGGAGGTCATCTGCTCCAGAATGAGGTACATCTCCTCTCAGATTGAGAGGCCCATCCGCATCGTGGCTCTCAGTTCCTCTCTGTCCAATGCTAAAGACGTAGCCCACTGGCTGGGCTGCAGTACCACGGCAACCTTCAATTTCCACCCTAATGTTCGGCCTGTGCCACTGGAACTCCACATCCAGGGTTTCAATGTGAGTCACACACAGACCCGTCTGCTGTCTATGGCTAAACCTGTCTATCATAGCATCATGAAGCACTCACCATCCAAACCAACCTTGGTGTTTGTGCCATCTCGTCGTCAAACCCGCCTCACTGCCATTGACATCCTCACGTTCTGTGCTGCAGACGTCGTTCCTCAGAGATTCCTGCATTGCACTGAGAAGGACCTGGCCCCGTTCCTGGAGAAGCTGTCTGATGCAACATTAAGGGAAACCCTTTCTAATGGTGTGGGCTATCTGCATGAGGGACTCTCCTCCACAGAATGCAAGATTGTTGAGCAACTCTTCAACTCTGGTGCCATTCAGGTCGTGGTGGCATCCCGTTCTCTTTGCTGGGGAACTAACATCTCTGCCCACTTGGTGATTGTCATGGACACGCAGTACTACAATGGCAAAATTCATGCTTATGTGGACTATCCAATCTACGACGTGCTCCAGATGGTGGGGAAAGCTAATCGCCCCCTACAGGATGATGAGGGCCGCTGTGTCATCATGTGCCAAGGATCTAAAAAGGACTTCTTCAAGAAATTCCTCTACGAGCCTCTGCCTGTTGAATCCCACCTGGACCACTGTCTCCATGATCACTTTAATGCTGAGATTGTCACGAAGACTGTGGAGAACAAGCAGGATGCTGTGGACTATCTGACGTGGACCTTCCTTTACCGCCGCATGACCCAGAATCCCAACTACTACAACCTGCAGGGTATGTCTCACCGGCACCTGTCGGACCACTTGTCGGAGCTGGTGGAGAACACGCTGCAGGATCTGGAGCAGTCCAAGTGCATCAGTGTGGAGGATGAGATGGATGTAGCTCCCCTCAACCTGGGCATGATCGCCGCTTACTACTACATTAACTATACCACCATCGAGTTGTTCAGCATGTCGCTGAATGCAAAGACAAAGATCCGTGGCCTGATCGAGATCATTTCCAATGCAGCAGAGTATAAGAACATTCCCATCAGACATCATGAAGATACGCTGCTCCGCCAGCTGGCTCAAAAAGTTCCCCACAAGCTGAACAGCCCCAAGTTTAATGACCCACACGTGAAGACCAACCTGCTGCTGCAAGCCCATCTCTCCCGTATGCAACTGAGTGCAGAGCTTCAATCTGACACGGAAGATATCCTCAGCAAGGCTGTGCGTCTCATTCAAGCATGTGTGGATGTGCTCTCCAGTAACGGCTGGCTGAGTCCTGCTCTGGCTGCTATGGAGCTGGCACAGATGGTGACTCAGGCCATGTGGTCTAAAGACTCGTATCTCAGACAGCTACCACACTTTACCACGGAGCACATCAAACGCTGCACTGATAAGggaGTGGAGAGTATTTTTGACATTATGGAAATGGAGGATGAGGAGCGCACTGCTCTCTTACAGCTGTCTGATGTTCAGATGGCTGATGTGGCACGGTTTTGTAACCGCTACCCTAATATTGAGCTATCCTACGAAGTTGCCGACAAAGACTACATCAAGAGTGGCAGTCCAGTTCTGGTTCAGGTGcagttagagagagaggaagaggtgaCTGGACCAGTCATTGCTCCACTCTTTCCCCAGaAACGTGAAGAGGGCTGGTGGGTTGTAATTGGAGACCCTAAGTCTAACAGTCTCATCTCCATTAAGAGGTTGACTCTGCAGCAGAAGGCCAAGGTGAAACTGGACTTCGTGGCCCCTGTTGTTGGAGTGCATAACTACACGCTGTATTTTATGAGTGATGCTTACATGGGCTGTGACCAAGAGTACAAGTTTAGCGTGGATGTGAAGGAGGCGGACAGTGATGGGGACAGCGACTCTGACTAatcttgtgttttgtgtgtattcttatgttttttttttttttgtaaaattcttGATTTTGTGAAAACTATGGTGAAACCTGCTTTTGCATAtgaaatattcataaaattgttctaaattcatttaaaagaaaCGCTGTACTTCTAATCTCGCAAATTGTGTTGCTTGGAAGTTGAGAAATTGTGTGtaaatttacacattttgatGTTTTGCTGGGTCAGGAATACATATTCTGAAATGTTGTTAGTATATGTCTGTTCCTGTTTTCACATTTGCTGTGGGTTAAAATGCGAACAAACAGGCCAAGCAAGATGGTAATCAAGCAGATATTTCAGTACAGCTCTGCTGTTCTGTTGCTACACTGCTGATAGTATGTGGATGTGAAGAGAATTTAAATACACAGATCCCAAGGATGGGTATTGTAAAGTTCTCttactttgatctttttttaCTGAGTTGAATTGTGTATGGGAATAAAGAGGTTGGTTGTCGAGAGTTTGTCTAGAATCTGTGCATTGCGTTTCGATCATATGATTAtagtttttaatgaataaagCTAGTCATTCAA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12854 SNRNP200, BRR2; pre-mRNA-splicing helicase BRR2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79106 lncRNA downstream 93272 44491054 ~ 44493034 (-) True G58681
TU79107 lncRNA downstream 93272 44492250 ~ 44493034 (-) False G58681
TU79073 lncRNA downstream 171502 44413427 ~ 44414804 (-) True G58655
TU79060 lncRNA downstream 185765 44324689 ~ 44400541 (-) True G58643
TU79058 lncRNA downstream 261894 44323526 ~ 44324412 (-) True G58642
TU79178 lncRNA upstream 8508 44630578 ~ 44630874 (-) True G58733
TU79203 lncRNA upstream 68546 44690616 ~ 44699500 (-) True G58758
TU79204 lncRNA upstream 78961 44701031 ~ 44701240 (-) True G58759
TU79219 lncRNA upstream 152267 44774337 ~ 44774596 (-) True G58769
TU79220 lncRNA upstream 152939 44775009 ~ 44775224 (-) True G58770
XM_022670742.1 mRNA downstream 161788 44374301 ~ 44424518 (-) True LOC103031680
XM_022670743.1 mRNA downstream 161789 44374301 ~ 44424517 (-) False LOC103031680
XM_007239435.3 mRNA downstream 245152 44328243 ~ 44341154 (-) True LOC103031368
XM_007239431.3 mRNA downstream 278471 44249997 ~ 44307835 (-) True gapvd1
XM_022670735.1 mRNA downstream 547693 43919229 ~ 44038613 (-) False LOC103029164
XM_022670933.1 mRNA upstream 87608 44709678 ~ 44771528 (-) True rasal1
XM_007237211.3 mRNA upstream 578275 45200345 ~ 45382669 (-) True lrrtm4
XM_022670746.1 mRNA upstream 579099 45201169 ~ 45382669 (-) False lrrtm4
XM_022670747.1 mRNA upstream 915740 45537810 ~ 45547163 (-) False mbd4
XM_022670748.1 mRNA upstream 915740 45537810 ~ 45545267 (-) False mbd4
TU79103 other downstream 108640 44474159 ~ 44477666 (-) True G58678
TU79066 other downstream 217938 44367900 ~ 44368368 (-) True G58649
TU78909 other downstream 903622 43682324 ~ 43682684 (-) True G58537
TU78780 other downstream 1478683 43102870 ~ 43107623 (-) True G58435
TU78238 other downstream 3187828 41396086 ~ 41398478 (-) True G58022
TU79350 other upstream 439039 45061109 ~ 45061674 (-) True G58868
TU79950 other upstream 1420721 46042791 ~ 46049573 (-) False nr2c2
TU79995 other upstream 1560671 46182741 ~ 46186894 (-) True G59341
TU80091 other upstream 2001542 46623612 ~ 46681911 (-) False LOC103023429
XR_002650096.1 other upstream 2377514 46999584 ~ 47000664 (-) True LOC111192695

Expression Profile