RNA id: TU79250


Basic Information

Item Value
RNA id TU79250
length 516
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G58788
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44802826 ~ 44810711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttattattattattattattctttttctcctgtaaaaacagttgtgcagcctaaaccgtaagtcatagagaaatgaaacttggtaggtagatgtaggatcagtgcatctcggtggacaacaaaaatggcaccgattggtcaagtggtggcgctataaacaaggaaattcatttttcacaattttctcaataactcaaaaaccataagacctacattcaaaattctttttttgatggattccttgggtcaataccaacaactttccaatttggaccatgcacttccgtctatatagattttgtgctaatttgcataatatgcaaaacctacttttgcaaactagtcctaggaattttgaccaatcctggcatgtttggtatcaaaacactcatgagagcatgcgcttcaatattcattaagaaaaagttgaaatatgtaaacaatatggccgccatatgcaaattagtccttccggatatatgccccattcacttcaagaggtaaatttggagcact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79218 lncRNA upstream 28229 44774262 ~ 44774597 (+) True G58768
TU79121 lncRNA upstream 218908 44579080 ~ 44583918 (+) True LOC103028384
TU79086 lncRNA upstream 356345 44440050 ~ 44446481 (+) False LOC111192736
TU79077 lncRNA upstream 369350 44429972 ~ 44433476 (+) True G58658
TU79016 lncRNA upstream 375851 44366384 ~ 44426975 (+) True G58610
TU79297 lncRNA downstream 93445 44898689 ~ 44899860 (+) True G58820
TU79299 lncRNA downstream 95008 44900252 ~ 44900642 (+) True G58822
TU79300 lncRNA downstream 95480 44900724 ~ 44901104 (+) True G58823
TU79301 lncRNA downstream 95954 44901198 ~ 44902709 (+) True G58824
TU79308 lncRNA downstream 112313 44917557 ~ 44918067 (+) True G58830
XM_007235870.2 mRNA upstream 110476 44635726 ~ 44692350 (+) True dtx1
XM_007235867.3 mRNA upstream 235315 44555413 ~ 44567511 (+) True LOC103027865
XM_007235865.3 mRNA upstream 261844 44535869 ~ 44540982 (+) True LOC103027244
XM_022670932.1 mRNA upstream 273374 44448432 ~ 44529452 (+) True LOC103030075
XM_022670963.1 mRNA upstream 356323 44437065 ~ 44446503 (+) False LOC111192736
XM_022670934.1 mRNA downstream 33185 44838429 ~ 44839196 (+) True LOC111192718
XM_007235872.2 mRNA downstream 47536 44852780 ~ 44866838 (+) True LOC103029434
XM_022670935.1 mRNA downstream 698847 45504091 ~ 45521326 (+) True LOC103029982
XM_007238287.3 mRNA downstream 716529 45521773 ~ 45534629 (+) False creld1
XM_007238286.3 mRNA downstream 716805 45522049 ~ 45534629 (+) True creld1
TU79126 other upstream 201866 44595233 ~ 44600960 (+) True G58696
TU79125 other upstream 201866 44595922 ~ 44600960 (+) False G58696
XR_002650089.1 other upstream 218908 44579126 ~ 44583918 (+) False LOC103028384
TU78895 other upstream 1141179 43660782 ~ 43661647 (+) True G58529
trnar-ucg_3 other upstream 1963916 42838838 ~ 42838910 (+) True trnar-ucg_3
XR_002650090.1 other downstream 47536 44852780 ~ 44866838 (+) False LOC103029434
TU79487 other downstream 984467 45789711 ~ 45790154 (+) True G58971
TU79888 other downstream 2047120 46852364 ~ 46881891 (+) True G59257
TU80591 other downstream 4064923 48870167 ~ 48879623 (+) True G59782
TU80616 other downstream 4192916 48998160 ~ 48998471 (+) True G59806

Expression Profile