RNA id: TU79345


Basic Information

Item Value
RNA id TU79345
length 365
lncRNA type inter_gene
GC content 0.67
exon number 1
gene id G58863
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 45015742 ~ 45016106 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctccgaggacgaagaggagctctacgccgcaccagcccgtactccaaaaccgtttcccccaggggcggtgctctacccggctctcggccgcacagctCCAGAGGCCGTCCCGACTCACGTCCGTTCCCCTGCAGCCAAGGTGCGCTCCTCACCGGCggttccagagctagcttccccggtggctaaggcgttagcttccccggcgcctccaaagctagctcctccCGCGGCCAAGACACTCTCCTCTCCCGCGGCAAAGGCGCAAGCTGTGAAACCGCGCTCCGGGACTTCCGCGATGGCAGTCGAACCGCGCTCCGTGTTCCCCGCGGTTGCTGCCGAATCGCGCTACAGGACCTCCAACCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79342 lncRNA upstream 18656 44996636 ~ 44997086 (+) True G58860
TU79315 lncRNA upstream 61102 44953950 ~ 44954640 (+) True G58837
TU79308 lncRNA upstream 97675 44917557 ~ 44918067 (+) True G58830
TU79301 lncRNA upstream 113033 44901198 ~ 44902709 (+) True G58824
TU79300 lncRNA upstream 114638 44900724 ~ 44901104 (+) True G58823
TU79380 lncRNA downstream 156072 45172178 ~ 45172462 (+) True G58895
TU79388 lncRNA downstream 176971 45193077 ~ 45235126 (+) True G58903
TU79449 lncRNA downstream 524476 45540582 ~ 45543722 (+) False G58945
TU79450 lncRNA downstream 524476 45540582 ~ 45545478 (+) True G58945
TU79475 lncRNA downstream 725940 45742046 ~ 45744398 (+) True G58962
XM_007235872.2 mRNA upstream 148904 44852780 ~ 44866838 (+) True LOC103029434
XM_022670934.1 mRNA upstream 176546 44838429 ~ 44839196 (+) True LOC111192718
XM_007235870.2 mRNA upstream 323392 44635726 ~ 44692350 (+) True dtx1
XM_007235867.3 mRNA upstream 448231 44555413 ~ 44567511 (+) True LOC103027865
XM_007235865.3 mRNA upstream 474760 44535869 ~ 44540982 (+) True LOC103027244
XM_022670935.1 mRNA downstream 487985 45504091 ~ 45521326 (+) True LOC103029982
XM_007238287.3 mRNA downstream 505667 45521773 ~ 45534629 (+) False creld1
XM_007238286.3 mRNA downstream 505943 45522049 ~ 45534629 (+) True creld1
XM_022670751.1 mRNA downstream 532036 45548142 ~ 45606522 (+) True ift122
XM_022670752.1 mRNA downstream 532036 45548142 ~ 45606522 (+) False ift122
XR_002650090.1 other upstream 148904 44852780 ~ 44866838 (+) False LOC103029434
TU79126 other upstream 414782 44595233 ~ 44600960 (+) True G58696
TU79125 other upstream 414782 44595922 ~ 44600960 (+) False G58696
XR_002650089.1 other upstream 431824 44579126 ~ 44583918 (+) False LOC103028384
TU78895 other upstream 1354095 43660782 ~ 43661647 (+) True G58529
TU79487 other downstream 773605 45789711 ~ 45790154 (+) True G58971
TU79888 other downstream 1836258 46852364 ~ 46881891 (+) True G59257
TU80591 other downstream 3854061 48870167 ~ 48879623 (+) True G59782
TU80616 other downstream 3982054 48998160 ~ 48998471 (+) True G59806
TU80792 other downstream 4407410 49423516 ~ 49437613 (+) True G59961

Expression Profile