RNA id: TU79651


Basic Information

Item Value
RNA id TU79651
length 239
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G59088
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 45891510 ~ 45891748 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cactgagaaactgcagaactatgtatgggattacaatatgcgtgcgaggcagatgaaagagaaacaggagatacagtgtgtgagaacatttacctgtgagtagctcataccagaacaggcaaatctctctctctctttctctctcacgtttcttagattgatctctctgatgagatgtgtgaaaactaataaaaactagcaagcccaccctaaaaacttactgaacagaaaaaaaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79647 lncRNA upstream 8511 45882784 ~ 45882999 (+) True G59084
TU79643 lncRNA upstream 51941 45839208 ~ 45839569 (+) True G59080
TU79642 lncRNA upstream 57405 45833838 ~ 45834105 (+) True G59079
TU79624 lncRNA upstream 68674 45816571 ~ 45822836 (+) False G59067
TU79625 lncRNA upstream 68674 45816571 ~ 45822836 (+) False G59067
TU79652 lncRNA downstream 1546 45893294 ~ 45897902 (+) True G59089
TU79653 lncRNA downstream 1546 45893294 ~ 45897902 (+) False G59089
TU79654 lncRNA downstream 1546 45893294 ~ 45897902 (+) False G59089
TU79657 lncRNA downstream 8924 45900672 ~ 45901408 (+) True G59091
TU79662 lncRNA downstream 14363 45906111 ~ 45906318 (+) True G59093
XM_007238280.3 mRNA upstream 277937 45607741 ~ 45613573 (+) True rho
XM_022670751.1 mRNA upstream 284988 45548142 ~ 45606522 (+) True ift122
XM_022670752.1 mRNA upstream 284988 45548142 ~ 45606522 (+) False ift122
XM_007238287.3 mRNA upstream 356881 45521773 ~ 45534629 (+) False creld1
XM_022670755.1 mRNA downstream 49120 45940868 ~ 45943458 (+) False trh
XM_007241177.3 mRNA downstream 49121 45940869 ~ 45943458 (+) True trh
XM_022670756.1 mRNA downstream 101310 45993058 ~ 46013668 (+) True rbsn
XM_022670758.1 mRNA downstream 165726 46057474 ~ 46070282 (+) False LOC103044102
XM_022670760.1 mRNA downstream 165726 46057474 ~ 46070282 (+) False LOC103044102
TU79487 other upstream 101356 45789711 ~ 45790154 (+) True G58971
XR_002650090.1 other upstream 1024672 44852780 ~ 44866838 (+) False LOC103029434
TU79126 other upstream 1290550 44595233 ~ 44600960 (+) True G58696
TU79125 other upstream 1290550 44595922 ~ 44600960 (+) False G58696
XR_002650089.1 other upstream 1307592 44579126 ~ 44583918 (+) False LOC103028384
TU79888 other downstream 960616 46852364 ~ 46881891 (+) True G59257
TU80591 other downstream 2978419 48870167 ~ 48879623 (+) True G59782
TU80616 other downstream 3106412 48998160 ~ 48998471 (+) True G59806
TU80792 other downstream 3531768 49423516 ~ 49437613 (+) True G59961
XR_002650102.1 other downstream 4747746 50639494 ~ 50652274 (+) False LOC103045694

Expression Profile