RNA id: TU79714



Basic Information


Item Value
RNA id TU79714
length 761
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G59136
representative True

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46094099 ~ 46094982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TTTATATATCCTATGTATGTAATCCATTTTGTTGATCCATATCATGTGTGAGTCTTCATACCTTTTGTAGTTACACCATCATTTATTCATCTGTTTTGGTGTTATAGATGCTATGTATAATCATGTATTTCCTACTACTCTGTCATATTTGCTCGCATTTATGCATGCAAATCGTGTCGGATCAGCATGGCTTGATATGGGCTTGGGACTTATAAATAGCACGGAACCTGcaccttaaaaatgttaaaacttagTTCAAACTTGATCTTTATTTACTAGATAACAGCCAATCACTTAACCAATCCCACCACAATTGATGCGTGGGATAAATCCCACGCAAGGGGGGAATGTGGGCCCTAAATTGGTGATCAATATATGCTATATTACCTTTATAATAGTATATTTGGATAAAAAGTCTAGAGTTCACTAAGTTCTGTTAAAACAGGTGTCTGACCCTTTCTCTGAGGCCTGTACAGTCTGTACCAAGGCGTGAGGTGCTGGTCGAGGCGACCTTGGGTTTTGGCTGACTTCAGCAGAAAAAGCCCAGACGTTGCCAAAAGCCCCCACCTTTGTTCacccaaatactgtataaaagtgtgtgtattcCTCTGTATTATCAGAAGACTGAAGCTTCCTGACCCTATCTGGCTGACTTCAAGAACAATAAAAGATCAACTTAGAACTTCGGAAAGACtcgtcttctcctttctttaaacttgaggcactcgtctgtttttatcttctttcttttaaacttaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU79707 lncRNA upstream 280 46092568 ~ 46093819 (+) True G59131
TU79703 lncRNA upstream 47837 46045144 ~ 46046262 (+) True G59127
TU79671 lncRNA upstream 59869 46023108 ~ 46034230 (+) True G59101
TU79672 lncRNA upstream 59869 46023108 ~ 46034230 (+) False G59101
TU79663 lncRNA upstream 186002 45907602 ~ 45908097 (+) True G59094
TU79724 lncRNA downstream 11985 46106967 ~ 46108427 (+) True G59140
TU79727 lncRNA downstream 21745 46116727 ~ 46121462 (+) True G59141
TU79726 lncRNA downstream 24911 46119893 ~ 46121462 (+) False G59141
XR_002650091.1 lncRNA downstream 114759 46209741 ~ 46216357 (+) True LOC111192691
TU79753 lncRNA downstream 156717 46251699 ~ 46256811 (+) True G59163
XM_022670758.1 mRNA upstream 23817 46057474 ~ 46070282 (+) False LOC103044102
XM_022670771.1 mRNA downstream 27879 46122861 ~ 46186900 (+) False LOC111192690
XM_022670772.1 mRNA downstream 28142 46123124 ~ 46186894 (+) True LOC111192690
XM_022670965.1 mRNA downstream 310772 46405754 ~ 46423234 (+) True LOC111192738
XM_022670967.1 mRNA downstream 601497 46696479 ~ 46697515 (+) True LOC111192740
XM_007237033.2 mRNA downstream 732986 46827968 ~ 46851232 (+) True mmp23b
TU79487 other upstream 303945 45789711 ~ 45790154 (+) True G58971
XR_002650090.1 other upstream 1227261 44852780 ~ 44866838 (+) False LOC103029434
TU79126 other upstream 1493139 44595233 ~ 44600960 (+) True G58696
TU79125 other upstream 1493139 44595922 ~ 44600960 (+) False G58696
XR_002650089.1 other upstream 1510181 44579126 ~ 44583918 (+) False LOC103028384
TU79888 other downstream 757382 46852364 ~ 46881891 (+) True G59257
TU80591 other downstream 2775185 48870167 ~ 48879623 (+) True G59782
TU80616 other downstream 2903178 48998160 ~ 48998471 (+) True G59806
TU80792 other downstream 3328534 49423516 ~ 49437613 (+) True G59961
XR_002650102.1 other downstream 4544512 50639494 ~ 50652274 (+) False LOC103045694

Expression Profile