RNA id: TU79852


Basic Information

Item Value
RNA id TU79852
length 6067
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G59232
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46600448 ~ 46607372 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCGTTTTAGTCCCATTTATTGATTTTAACCAGCATGACTACCTTTACACAGACCGAGTAACCCTCTACAGAAAACCAAACAACACTTTTTCTGGGTTAGTTCTACTTCACTCAATAGCTAAACACATTTCATTTATTCTCATtagtcatttcattttttttttcttttgcttttctaACCTCTTTAAAGTTCtatgtttgttttcagttctGTGTAAAAGTTTCCATGACGGAAGAAAAACATGCATATGACATTAAATTTGAGttcttttccttatttttttgtcaCTAATCATAATGCACGTTATTGATAAAGAGTACAGTACTGCAAGACATTGCAAATAAATACCAACATATGGATGAAttcattgttttatataaaggTATCAAACGCTCCTTTCGGATCAATACTGGAACACAATTATGACCATGTAAATTTCGCACAGCTAGTTGAATATCACAGCGCTATCGCTTCCAGCAAACAGAAAACCTCATTCTCCGTGTAAATCAGCGTTCTGAATTGCACTTGAttcaatttcttttttcttttcttttctgttttgctCACGTCCAAAATGTGCTTATTTGCATTAACGCCTCAACAAACCGCGTGTGACTTTCGTGGCACTTTTCAAGCTTGTTGATGCaaaatgttttctgtttcctgaaattacaatgtttttaaaaagattatgtaaaaaaagcattaaaaaaacaaacaaaaaaaacagcaaacaaaaaaacagtgaaactcAAAATGACAAAAGGAGGACGCGTGTTCACACATTTGTCAACAATACTATCGATACCACGCTACCTTTACCAAATAAAAGCTATAGATACACCAGTCTTCATCAGCGATACGCCACACAAGCGTgcagtgtctctttctcttttttttttgttcattatgaGGCAAAAACATTTCTGATTCCCAccacttgatttaaaaaaagacctTTTGCTAAAACCCCTGAATTTGCTAAGGGGATCGCTGAGTTCAAGAATTCACCACAAAAGTTTAAATTCACCTAATGTCTCAAGACTAAGGAAACACACTCGCCAAAAACAGATTGTGTGTTCTCTGCACTTATTGCTGCTTCTAAGTGTCCTCTGAAGTAAGAAATTCCTCCTTACCTTCAGGAGAGGCCAAAAGAAACTACGAGAATAAACTAATATCTAGACTAGAATTCTCTCTTGAAATAACGAAAGGCACTACTGGTCTGAACAAAGAGCAAAAAGCCCGTAAAAACGAAGAAGAAACTAAATCAAACGCAGGGAATGATCGTGGGAATCGGGACCCACTATAAACAGCTCCTTCGTCTTCGGTCTGGTTTTgatcctttttctctttttctcacatcaaacgtaacaaaaaataaacggTGTACCGAGACTTGGCAcgataaataaagagagaatgagagcatTCCAATTTGGAATTGATTCGATTACGCTCGCAGAGAATTCGTGAAGTCAGCGATCCCTAGAAAGCTTGAGTAAAGAATGGcaggaagaaaaacaaaacccaTGCTCCTTTTTATTAGTGTACTCGCTGTTTTTCTCACACGTTTCTGGGTTTGTATTTCCTGAAGCCTGCTTTCACTTTACCGTGTTAAGCCAGAACGTCGTCAAGTTTCTCCACGTTCACTTTGAACTATTCCTAAGAATaataaatagacaaaaaagCCCAGCATCTGACCACCCGGGAGTTTGTTTCAGAATATGGCAGTAGAACAAATGAAACAAAttcaaatacaataaaacacaataaatgatCAACATCATAAAGGAAATATAAAGGATGAATGCTTGTGGATTCATTTCACAGAATACAACAGGACTGGTTTGCAGTGGGAGTAGATTTGGATAAGTGAGTAAGTTGATCTCTGATACTCTGATACTGGTATGCAGAGTGTGTATATGAATGTTTGGTTATCGTCTCTATAGATATATatgtagttatatatatatgtgtatgtagtATTGGGTATAGTTGAACTGACTCACAAACCAAAGCACTACAAACCTTTcctagattaataataaagcgATATACTCCTATATTAAAAGTGCACaggttaaacaaaaaaagactaCAAGTCTGTTGTTGTAGTGTATTAAGTCTATTCAGctctttatatatttctaatttTGGACGATTTACTTAACCGTAACTCGTATGGGCGGAGTTTTCCATTCTTTGTGAGCACAGGCTTTCcactatacttaaaaaaaaaaaataaacgaaaAACAAAAGAAGTATTACGCTAGATTTCACTTTTACTCGTTTCCTATAGTAGAAGTGGGGAAATGTTCGTAATCCAGAATTTGTAACAATTAGTTTCAGTCTTCCATTGGATTTCCATTGGGCTAAAACTTTATGGCAGACTGAATTTGTCGGCAGTGATGGAATGTCGACTTCCCAGCTCAACTAGGGGGCTGGACTTTACTGCAAAATggagaaaacaaagaaataatagaGATTAGCGTTACGGTTAAATTTAGTGCCGTTTCAAATATGCAAATCAGAGGCATGCTGGCAGCACGTTAAAGCGAacctttaaaagtaaaaagcaaaaaacaaaacaaaaaagccgATATTAGTTTACGAGCAAGAGGAAAACAAGGTTAGTCTCCAAAAGCCAAACGTCAGTAATTCGCCTTTGTGTTGTGTAAAGTAGAAAACAGCACGTGCAGAAAGCCATTGGCTCACAAGTAGCAAAAACCCCGCCCATCTCCCGCTGAAGCTCCACCCTCTCAGACCTGGGAGTGGGGATTCTCATTGCCATGCAAGTCAATTAATAAACTGGGCATATACCTGGGTTACATACTGCATGCATTTCGCGGGgcatcaaccaatcagagagGGCTCGGAGGAGTGGACattgactttattctttataatCAATACtagataaaatactaaaattccACTTTGTGATCAGTTAGTTATCTATGCTGAGAAGAATGTTAACACGCCAATTGAGTCAATGTCCACGGAGCCAGAGAAAAACAAACGAATAaaccaacaaataaacaaacaaaaataaaagacaaaattacACAGCTTATTTGCTAAATATTTCACCATTTTATCCCGTTCACAAGAAACTGGGGAACCTTTTTCCCAACCCGCCCGGTGACCCCATCTGATTATACAACAGTAATGTAAGAGTTAACCCCTCATCATCTCGACTCGACTCGTCTCGTCTGACTAAAACATTTAACGTCTCATCTTAAGCCCTCAGTTGTTGCTAACAGGATGCATGAAGGAACATAAAAGAGAGTGGTCAGATCCAAGcggtgtgtgtgtccgtgtgtgtttttgtgagtgtgtgaggaagGTGTGCGTATGTATTTGCGCGTGTGTAtacatgtgtgtttatgtgagtgTAAGAGAGTAAGATGACAGCGATAGctttgtgtctgtctgtttaatacagtacgttattattattattattatctaaagGCCTAACGAGGGCTTATATGCAGCACAGGCAGAAGCAGAGTTGAGGACTGAGGTGTCTGCGTTCCTCTGGCTAGGAGGAAGCTGGCCTGGGAAGATTCACCCTGAATAGGAATTcattaagaatatatatatataacgtttTAAGAAATTTGACgcaatatatatttgtgtataaaaAAGCACAACAGTGATTTCCTCGTCCGTCCTCAACCCTGCTTTTAGAGTAATAAAGCTAACAAAGTCATTTTCATCACCAGCATAATCATCATCCACAAGTGTAGGATTATTATCATGTTGTAATACAAGCCCCACCCTTTGCTTCCTTGTTTTATTTGACCTAGCCTAGCAATAGCTTGCaacattaaagcttttaaaatggtgtattttttttctcctcccatGAAACCATGATGGAATGCCTGGGAAATGAATGAACGATACCCAGCTTTGTTTACCGTGAACAAACACAATAAACGCTGCTCCGGCATTTCCTCTGAGAGAAGAGGTTCACGACAGTGTTACAGGAAATACGGGAACGTTACCTGCCGTTATTTAAAGGGAGAGTGACGAGGCATTGGGAGCAAGCTGCTGACAATCTAAAAGGAGAAAggtgtgaggaggaggaggagaagcaagaagaggaaaagagacGTTAGACTGGAAAGGGGTCGATGACGCGCTCGCAAACTCGTATACATACTCGTatactcaaatacacacacacacacacttttagagATTTTAGACCTAGAAGCAAATGGAGTGGGCGGGGTCAAAGAGGAAAGATTAGCGCAAGCTTTCCAAAACACAAAGGACAGGGCTTTACAGTGAGAAATGATCGGTTGCTGATAGAAGTCGAGAGACAGGCACTTTTCTatggtgatgtttttttaacGTTGTTTTTTACGTTCCCATTGTACTAATTTTCACTTGACATCCTGATCagagtgatttttttatgtgttgtgCTCTTagtttcttctttgtttttggATCAGTTGAACCACCACCAAAAAaacaattccttttttttttttacagatcttAAGAAGTGTTTTTCCTTCAAATCTGCCTTTCTGTGCGGCAAAGTGCGGAACCTGAGTCCCCTCGCTGAAGTGCACTTGAATTTGAAGGGAGAGGGCTGATTCCGTTTCTCCCTCTACCTTCTTTATTTTCCAGTGTTATGGCTATAAAGAAGAAGCTTTCTCCACGTTTTCTGAGAGACAGATCCATGAGAAAGACAGCAACAGGGTTTAGAGGAGGAATTAGTTCctctttaatttaaattgattcctctctctttctctcacttttttgttttttttgcgtGTAGAGccctgttttaaatgtgctcAAGATGGAGACGGAACCCAAGATGCTGTAAAGTACTAAGAACGACAGGAGCTGTAGTTGTTCGCAGCCAAGAATCTGCTagcaattgataaaaaaaaaaaacgcatgcAAGTGCCAAAAAATAcagtctgaatctgaatcttgGCGTAAAATCTTGCCGTTCTgcgaaaaagagcaaaaaaatcgGACGCCCTCTCCCGCCCACCTCCAGCTGAGCGAGACAGGACAGGAAAACGTCCTAAATTTGTTGGCAAACCCGTCGTTTGTCTGGTTTTAAGTTTCGATTCGTATCAAAAATACTTGTTCTCCCCTTCTGTCAGAAGACTGGGGGAAATTGCATATTCACGAGTTTATTTAAGAATGTAAACATTAGCCACCTGATTAGACAACGGGTTGCCAGGTTCAGGTTGAGGGAGGTTTTCTCCGaggcaggagagagagggaacgagGGAGAGGGCAGGAGGGACCGCTTAAAGAAGTCTACTGAGTTGCGAAGGGCAGCTAGGATTACGGCACGACCACAAAAAACAACGCCCTCGCGGCTAGCTCCGATTAGCATGACTAGCGGTCAGGTCAGGAAACAAGCACACACGCGTACGCAAATCTATCTGCCGCTTAAGATACAGCACCATGAGTACAGAAGGAAACACTCTGCCCTCTGTGTGaaagaaaataacaacaaaacaactAATTTTGGCAGCTTTTTTAGCTAGTGCTACCATATTAGCCGTCCTCATTCACAGAGCTACTAATACAATGGTAGGCAAACCCATACACAGCCctaacagacacacatacacaccgcACAGGTCAGCaggagagcgagcgagagagccGAGCATGTGAGTAGTGGGGCTTTGTACACCGATTTAGTGCCGtttcagacaaacacacactcatgaaACTTTTAGTCGCAGTAGATCTTGTACTTCTCGCTGCAGAACACCATAGGCGTTCCCAGAAGGCCGTTGGGCTCGCCCCGACCCCCGCAGGTGGCCGTGAGGGTCGGACTTACATGGGACGGCTGGGCCGCGCTCTGGGCCAGCTTGGCCCTGGACGACTTGGTGCGGCCGTTGGCTCCGCCGCGGCGGGTCTGCTCGTGGTCGAACTCCAGGTCCTCCAGACGCTGCGTGAGGGCCAGCTTCTGCTGGATGGCCATGCGGAGGAGAGAGTTCAGGGTCTTCTTCTCGTCTTCTGCTGCCGCCAGCTGCCTCTGCATCTCATCCAGCTGAGTAACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79831 lncRNA upstream 114862 46483437 ~ 46485586 (+) True G59220
TU79825 lncRNA upstream 124469 46471775 ~ 46475979 (+) True G59215
TU79805 lncRNA upstream 162414 46437464 ~ 46438034 (+) False G59197
TU79812 lncRNA upstream 163088 46435706 ~ 46437360 (+) True G59203
TU79802 lncRNA upstream 165856 46431252 ~ 46434592 (+) True G59197
TU79862 lncRNA downstream 77277 46684649 ~ 46685038 (+) True G59241
TU79864 lncRNA downstream 79889 46687261 ~ 46688027 (+) True G59243
XR_002650119.1 lncRNA downstream 82885 46690257 ~ 46690960 (+) True LOC111192739
TU79895 lncRNA downstream 211794 46819166 ~ 46824686 (+) True G59259
TU79889 lncRNA downstream 244992 46852364 ~ 46860603 (+) False G59257
XM_022670965.1 mRNA upstream 177214 46405754 ~ 46423234 (+) True LOC111192738
XM_022670771.1 mRNA upstream 413548 46122861 ~ 46186900 (+) False LOC111192690
XM_022670772.1 mRNA upstream 413554 46123124 ~ 46186894 (+) True LOC111192690
XM_022670759.1 mRNA upstream 530166 46060683 ~ 46070282 (+) True LOC103044102
XM_022670967.1 mRNA downstream 89107 46696479 ~ 46697515 (+) True LOC111192740
XM_007237033.2 mRNA downstream 220596 46827968 ~ 46851232 (+) True mmp23b
XM_007237040.3 mRNA downstream 300910 46908282 ~ 46923292 (+) True LOC103022408
XM_007237031.3 mRNA downstream 349734 46957106 ~ 46967434 (+) True LOC103046622
XM_007237029.2 mRNA downstream 381604 46988976 ~ 47024024 (+) True LOC103046011
TU79487 other upstream 810294 45789711 ~ 45790154 (+) True G58971
XR_002650090.1 other upstream 1733610 44852780 ~ 44866838 (+) False LOC103029434
TU79126 other upstream 1999488 44595233 ~ 44600960 (+) True G58696
TU79125 other upstream 1999488 44595922 ~ 44600960 (+) False G58696
XR_002650089.1 other upstream 2016530 44579126 ~ 44583918 (+) False LOC103028384
TU79888 other downstream 244992 46852364 ~ 46881891 (+) True G59257
TU80591 other downstream 2262795 48870167 ~ 48879623 (+) True G59782
TU80616 other downstream 2390788 48998160 ~ 48998471 (+) True G59806
TU80792 other downstream 2816144 49423516 ~ 49437613 (+) True G59961
XR_002650102.1 other downstream 4032122 50639494 ~ 50652274 (+) False LOC103045694

Expression Profile