RNA id: TU80538


Basic Information

Item Value
RNA id TU80538
length 231
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G59733
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 48433973 ~ 48434203 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttttggcagtgtgggcagtgtgccaagtcctgctggaaaatgaaatccacatctctataaaagttgtcagtagcagagggaagcatgaagtgctgtaagattttgtgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaccaccagcagatgacatgactctccaaaccatcactgattgtagaaacttcacactagacctcaagcagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80537 lncRNA upstream 2742 48430922 ~ 48431231 (+) True G59732
TU80536 lncRNA upstream 10467 48423289 ~ 48423506 (+) True G59731
TU80382 lncRNA upstream 512926 47920308 ~ 47921047 (+) True G59603
TU80375 lncRNA upstream 514639 47912516 ~ 47919334 (+) True G59597
TU80376 lncRNA upstream 514639 47912516 ~ 47919334 (+) False G59597
TU80539 lncRNA downstream 43634 48477837 ~ 48478110 (+) True G59734
TU80540 lncRNA downstream 44117 48478320 ~ 48478763 (+) True G59735
TU80578 lncRNA downstream 84866 48519069 ~ 48520282 (+) True G59772
TU80597 lncRNA downstream 473512 48907715 ~ 48908027 (+) True G59788
TU80602 lncRNA downstream 488387 48922590 ~ 48925434 (+) True G59793
XM_022670808.1 mRNA upstream 15761 47998093 ~ 48418212 (+) True cacna2d3
XM_022670809.1 mRNA upstream 15761 47998093 ~ 48418212 (+) False cacna2d3
XM_022670810.1 mRNA upstream 15761 48093612 ~ 48418212 (+) False cacna2d3
XM_007237001.3 mRNA upstream 500362 47927955 ~ 47933611 (+) True LOC103038409
XM_022670807.1 mRNA upstream 540018 47880396 ~ 47893955 (+) True il17rb
XM_022670826.1 mRNA downstream 769065 49203268 ~ 49268872 (+) True cep350
XM_022670828.1 mRNA downstream 769065 49203268 ~ 49268872 (+) False cep350
XM_022670827.1 mRNA downstream 769065 49203268 ~ 49268872 (+) False cep350
XM_022670830.1 mRNA downstream 769065 49203268 ~ 49268872 (+) False cep350
XM_022670831.1 mRNA downstream 838791 49272994 ~ 49308775 (+) True LOC103029228
TU79888 other upstream 1552082 46852364 ~ 46881891 (+) True G59257
TU79487 other upstream 2643819 45789711 ~ 45790154 (+) True G58971
XR_002650090.1 other upstream 3567135 44852780 ~ 44866838 (+) False LOC103029434
TU79126 other upstream 3833013 44595233 ~ 44600960 (+) True G58696
TU80591 other downstream 435964 48870167 ~ 48879623 (+) True G59782
TU80616 other downstream 563957 48998160 ~ 48998471 (+) True G59806
TU80792 other downstream 989313 49423516 ~ 49437613 (+) True G59961
XR_002650102.1 other downstream 2205291 50639494 ~ 50652274 (+) False LOC103045694
TU81516 other downstream 2841997 51276200 ~ 51286140 (+) True G60481

Expression Profile