RNA id: TU80591


Basic Information

Item Value
RNA id TU80591
length 7696
RNA type TUCP
GC content 0.43
exon number 4
gene id G59782
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 48870167 ~ 48879623 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aacacTTGAATTATATGCTTCTATTAAAAGCATAAACAGAGcatttaaagttaataaaacacttaatgTGTTAACCAAAACTTCTGGAACTAAATGCttatatttaaagcatataaaaggcatttttagtaattaaaatacagttaatattttactcaaaacattTGAGTTGCATGCTTAAAGCATGTAGAGACCATGTAACCCACTAATACAGACCAGATAAACTAGAGTTTCAAgcttaaactgaactgaacttcagcagaacttttaaacacatttagtgctatttttatgaaacaaataaaacatataaagctCTTCATAATTAAGCACTAGGATGCCCTATAAGCGGACAATGCTCACCTAGCAGGAGAATCAGTAAACACGAGTTAATAATATGACGGCAGCTGGAGCTAGCTGCAGCTATCagacctctctctcccttcgcGCCTAATCGTCTGAGCCTCGTGCTCTCCTGCCTATGCATTCCTATGGGAGCTGCGTGATTTTGCCGTAAAGCAGACAGAACTGACataaagtgtgtagtgtgtgtgaaaACTGCTGCGGTTTTCTTAAAGGGGCAGCGCTTAATTAAGGGGCAACCTTACATTAAATGTCTAGAAAACAGCTGGGTTACATCCTCCCCTGCTTAAAATATGACGTCCTCGTCATGCACAGTAGCTGTAGCCTGTATCAATGCTGCAATCTGCTCCTGCAAAGACATTAAGAAACTATAGAGCAGTTGAGGTGAGCTAACATTATGCTGTCTGCAACCAACTTGAGAGCCAACATGGTAATCCCTAAGATAAGAAGGGGGTTGACGTCTTCTCTGTGGTCTACTTTGTACTAGTCTTGGGCTTGCCACAATTTCACTGTCAGACAACTCAGTAGAGTCGACTGCAAAGTCTGGAGCTTCTGGATTCAAAGAGCTCTGGAATGGAGATAAAGTCTGTTCAGCTGGCTGACTACTGTCTAGTTCTTCAGACTGCATGCAAGGTACGTCAATGTCCTCTCTTGCTTCGGAAGTTTGTGAAGATTCAAGCATCACTTCTTCACAGCTTGTAGGGACTTGAGCTGGTGTTTCACACACTTGACTTTCTCTAACAGCTTCCAAATCTACAGGTAAAAACCCACATGGGAGCAGCAAGTCGCGATGAAGGACACGTTCTCTGCCTTCTCCGTCTTCTGTTCTCACCACATACACTGGTATGTTTTCATCAGGCTGCTTGATTACAATGTGAACAGCAGATTCCCACCGATCAGAaattttgtgtttctttctAAGGCTAAGATTCCTAACAAGAACTCTGTCGCCCACTTCCAGAGGCATGGCGGTCACATTGGCATCCCAGCGTCTCTTGTTAAGTGCCTGTCTTTTCTCAGCATTTTGTGATGCAAGGTTATACGCATGTCTGAGTCTGCTCTTCAACTCGCGCACATACTGGGAGTGTGTCTTGGGATTATGGCCTCGAGGACTAATGCCGAAGTAAAGATCTATTGGGAGGCGTGGCTGCCGACCAAACATGAGAAGAAAAGGTGCTTCACCGGTCGTATCATTTCTCGTGCAGTTATAAGCATGTACGAGGGGTCGAACGTATTTTCTCCAgtcctctttcttcttttcctccAGTGTTCCCAACAAATCAAGAAGAGTTCTGTTGAATCTCTCAACAGGATTTCCTCTGGGATGATATGGCGTGGTCCGAGACTTGATCCCAGACAGCGTACACAGCTCTGTTACTACTTCAGACTCAAAACAAGCTCCTTGATCGCTATGCAATCTACGGGGAAAACCATAGTGGCTAATGAAATTTTCCCACAGCACTTTAGCTACGGTTCTTGCAGTCTGATCTTTGGTAGGGTAAGCTTGTGAGTATTTTGTAAAGAAGTCTGTTATGACTAAAATATTACGAGTGTCTCCTGAATCAGGTTCTAAGCTCAGAAAGTCCATACAAACAAGCTCAAGTGGGGCAGTAACTTTTATGTTAACGAGCTTGGCTGCCTTCTGGGCTCTGGCCTTCCTCCTTACACACCTCTCACAAGCTTTACATTTAGCTTCAATGTACTGAGCCATTTTAGGCCAGTAAAATCTAGCTCTTGCAAGTTCTACTGTTCTCTCTATACCCATGTGGCCTGTTTCACTGTGGACACCATGAAATGCTTGCTCTCTGTGGCTGCTTGGTAAGACCAACTGATGGAAAGCCTCACCACTCTGATCAAAGACTTTGCGATGCAACACTCCATCCAGTAATACTAGTTTGGACTTTTCCCTTAGCAGAAGCACTGTCTCAGGCTCCCTTTCTCTCACATGTACATCCTCTTTGCCAGTGTTGCCTTCTAAAATGTCAATGATGTAGGCCAAGTTACGGTCTTTTCTCTGCAGTTGGTGCCAGTCTTCCATAGACATCCCTGGAATGGTTTCTTGACCTGGCCACAGGGCTGGATCTTCCAGATCATCGGGTACAGCTCCTTCACCACATAATAGAGTTTCTACTGCTGGGATTCCACTCTTGTCAGACTCACACATCTCTTGAGAAACGCTGTGATACGTGCACAGAGTACTCACTGCCTCTTCGTCTAGAATGCTGAAGTTGTCAGTGCATGGGCTTGCACAATTTAACAAACGGCATACATTCTCTCTCAGCTCCTCCGACTCCTCATCCTCTGATGGTTGTCCACAAGGCCTCCGAGAAAGTCCATCAGCATCAGCGTTACGCAGACCAGATCTGTAATGTATGTCAAAATTGTAGATTGACAGTGCAGCAAGCCACCTATGGCTAGTGGCATCTAGCTTTGCGCTGGTCAAGACATAAGTCAGTGGGTTGTTGTCTGTCAGCACCTTGAATTCAGACCCATACAAATAGTCATGGAATTTCTCGCTCACGGCCCACTTAAGAGCGAGAAATTCTAATTTGTGGGCTGGGTAGTTTCTCTCACTTCTGGAAAGCCCTCGACTGGCATACGCTACTACCCTTGTTTCACCGTCTTGAACCTGATACAAAACTGCACCTAATCCAGTGGTGCTCGCGTCTGTGTGCAGCACATAGGGGAGGTGCCAGTCTGCAAAGCCAAGAATGGGTGCTGAGGTCAGTTTATCAACGATCAATTCAAAAGCTTCCTGACAGCTATCAGCCCATTTGTCTCTCAGTAAAGGTGACTTAGCTCGTGGCCCATAATGAGGACGCTTGTGTCTGGAGGCATATTCTCCTTTTAATAAATCATTGAGAGGTCGGACTATTTTGGCATAATCGCGAACAAATCGGCGATAATATCCAGTGAATCCGAGAAAGGACCTGAGCTCACGAACTGTCTGTGGGCAAGGCCATGTTTTAATAGCCGCAACTTTATCGGGATCAGGCTGAATCCCCTGTGCAGAAATGACATGTCCTAGATACCTCACAGATGTTTGAAAAAATTTGCATTTGGAGGGGGATAGTTTGAGGCCGAAATCAGAAATGCGTTTTAGCACTTTCATCACCCTTTCCTCGTGCTCCTCcaatgtgctggagaagatgatAAGATCGTCAAGAAAAGTGATAACTTCCTGAAGGTTCATTCCTTCCATTACTTTCTCCATTGTGCGTTGAAATGTGGCTGGGGAGTTCGTCAGACCTTGTGGTAGCCTCCGGAATTGCCATGTACCAAACGGGGTTGTAAAGGCTGTTTTTGGTCGGTCAGAGGGCTCAACTTCGAGCTGATAAAATCCACTTTTAAGGTCCAGAACACTGAACCATTTCGAGCCTGACAGTAAGGTGAATGTCTCCTCTATACGTGGTAGAGGATATGCATCTTTCTTGGTGAGATTATTTAGCTTCCTGTAATCTACTACCATTCTCAGTTCTCCACTTTTCTTTCTAACAAGCACAATGGGAGATGCATACGGACTGTTTGATTCTTCAATGATGCCTGCTGCTAAAAGATCTTGCAAATGCTTTTTCAGATCATTAAAGTCAGCTGGAGAGACACGTCTTGTTCTTTCTTTAAATGGCACATGTGGCTCTAGCTCTATGTGATGCCGGACACCGGAGGCTGTGCCAACATCCAGATCACTCCTGGAAAAGGCTTGTGGAACTTCTTTCAGGATCCTGGTTTGTATTTGCTGTTTAAGCTGTGGACTTAGAGGGCTGTTATTAAAATCTAACTCCAGAGGCTCATGGACAGGAGCAGTTTTCTCGGTTTGAGAGATCAACAGAGAATGAGTCTGTAGCTTAGAAGTCTCGTGAGAATTTGCTGAGGTATTTGCAGTAATAGGAACAGCCCAATCAATGGGTGAACAAGATGCAATCACAGTTTTAGGAGACAGAGTAATGTCGTGCTGAGAGACATTTTCCACAAAGAACTCAACCTGGCCGTGAGAATTAGGTTTCATGTCAACTATTTGGTCATAGACTATGAGACCTCCAGGTGTGTGAATTTCATCTGAGCTACTGACAAGAGCTTGAACCATTTCACAATTAGAGTTACAGGGACACATGCCTTTCAACAGACTCACTTCACCTTGTTTCACATGGACTGGCTCTTTACTACTAAGCATTATGCGCAGAACATTAGCACTCTCTGCACTAGGCTTTGACTTTTCACGATAGTCTGCATAGGCCATGGCCCAGCTGGTCTGAATAGGTAAGGTCTTGAGAAACTGAGTTCCACTTTCTTTTATGCAGCGCGTGGTTAACTGGCGCAAAACATTAGTGCCAACAAGCAGAGGGAATTTCTCATTATATGACTGGTCCGGACTCACTAGCACTAGGGTGTTGAAGCGCTGACCTGTGCCACATGCATTCTGTGGGAACCGAAACTCTACTTCAATGTACCCTAAATAGGGGACTCTTTGTCCAGCTGCACCTTCAATATTTAGTACACTGCCTATCGAGTACAGTTCACGATGGGCTAGATGTTGGGAATAAAATGACTGGCATGCAATTGTTACTTGTGAGCCAGAGTCTATTAAACAGTGGCACTGCACACCATCTATCCAAGCAACACTTTCACAAACATCACCAACAAGACCCTCAGGAATCTGAGTAGATGCTTCCTTAGTTGGGGACAGTCCATACATGCAGTAGCTCTCGGAACTAGTTTGAATTTTAGCTCCTGCTCGTTCCGCAGCAGGAGCTCTTACATGTTTAAAGGCAGAGGATGCTCGGGAGCTTGCTGGTGGCTTTGTCTACTACGATGCCTTTCACACAGCTTGCTTTGCACTAGGACAGCGTTAGTTGAATTTGTACACTGAGGTAGTAGATGAGAATTCTCCCCGCAGTTGTAGCAGAATCTCCCAACATTGGCTTCTCTTGCTGCAGAAACAACTAGATCAGCTTTAAGGCTTTTAGCATTTTGTGAGGTCTTGTAATTGGCTTTATCATTTCTGGCATGCTGAAATTTTGGTGCAGATGCATTTCTTTTAATCTCAGCTTCCAGCTGTCTGATTCTCTCCTCTAACTGTGCTCTTGTACAGGCATCAAGCGCATAGTTGTCACAGCTGGAGCCCTTGGGCTCGTCAGGAGTCATGTGAGTTTTGGTATGGACTTTGGTTGACGTTACTCCTAAATGTCtttttcttctcatttcttTGAGATGACTTTCTTTCTCATAAGTTCTGATCCTGAGTAGCATCTCAGAAAAAGTGGGAATGCTCTTTGAGGGATCAGCTAGTAAATCTTTCAAGTGAAGAGTGGATATTAACTGGTCATCCCAACAGCCACGCAGAAACTGCTTTAACAACTGAGAGTCAGCATCACCTCTGGATACACCATTTCTCTCTATGACTTCTTGTAGCAAGGTTTGAAGACGGCGCAGGTACTCACTAACTGTTTCACCACTGTTTTGGTGCGTTTCCAAGTACTGGATGTACAGCTCTTCGCCCCCTGTGACATTACCATATGCGTTGTCCAGCTCCTGAAGATAGACACTTGGGGCAGCCTGAAGACCAACACGTAAGGCCACATTCAACGCTGGGGAGAGTAAGCTGTTAAGTATCGCACTGCGCTTCTGATTTTCGTTCAGAGTGAGGTCTTTTAGCCTCTGTTTGGCACGAAGCTGCCATGTGCTAAAATCTGCCTCAGTGTGGGGTTTAGGGAAATTACCAGAGAATGCTGGTAGCTCTTGTGGGGTGGCAGCATATGTCTGGGAGTCATGCTTGACTATATGTTCCACTAAGACACGATGAGTATCAGCTGGTATGGGGATGACGAGTGAGGGGTCAGCATTGGGCACTTGTGCATCTGAGGgatattttacatcactgtCGACACCCCTGTTTGCATCAGAGAGGAAATCTTGTTTGCAACGAGGGGCAGGAGTTGAGGTTAAAGGACTAGTTTTGTGCTCTTTCCTTCCACTCATATAGCCCATGGCTTTTTGGCTCAAGTTAATAGGACTGACATTGTAAGTGGTGGCTAGCTCCTCAATTTTCTCTCTAAAGTTAACTGTCATATCATCAATGACACGAGCTAATGGGGCTAGTTTTTCACTCTTAGGAGTTGTCTCTATTTTGTCTGGGCAGTACTCCTCTAGCTGAATTACCTCCCAGTGAGAGCCACTACCATCTGGATGCTCTGCTTCTAAAAGCATTGGAGTTACGCATTCTCGAAATTGGCATAAAATAGTACTGAGTTGTACATCAATGTGTTGAATCTTGACTACATGGTCTAGTAGGTCGAACACTTCCTGCACTGTTTCTAAATTGACCTTTGCCATATCACCTTTGAGGATGACTGTACATTCTGGGTCAAACCCATACTGTTCACATAACTCCATTTTACCAACTCTTTAAATGAGTCACAGCTATTGAATTTTCAATTAGAcagattttcagaaaatgaaaaaaaaaattagaaacgCTCCAGTCCctttaaaatgttccaAGCCAAATAAATGAGCCACAAAAGAAACTGATATAACTGGTAGTGAAGGGCATTTATTTTTGGGTCGGTAGCAGTGTACTACCTGTGTCCAACTTAATAAGAGTTTAGTGGACTGGAGCGTTTCTTTCTCTCAGCAATGAGTAAAATATTTCAATtacatgttatatatatatagagacacTTATGAAAATAATAcgtgtataaaaataaaaaaatatatacatatatttatataaaatgtacactGTCACACTTCCCTGAATTCACCTTGTATGAATGTaattaaacccaaataaaaaaaaatatattcactgAACAATATTGAAGAGCTCTTTAACCTTGAAAAGTATATAATTGTTTTCCAGAGAACAGTTCCTTTAAATGTTCGTgaagtagacaaaaaaaaaggaattgaaACAGTCCTTGAACAATTCGTACTCCGGGAGGAAAAATTGaaggaaaaatgcaaaaaaaaactatttgggtacccaacaaaaaaaaaaatatatatatagaaactcAATTCAGTTTACTTAATGATGCGGCCGTCTCACTCTCCTTCACTCTccgcctcactctctctctctctctcagcttggAAAGTAGCTTGAGCACACCACCAGTCTAGCAGGAGAATCAGTAAACACGAGTTAATAATATGACGGCAGCTGGAGCTAGCTGCAGCTATCagacctctctctcccttcgcGCCTAATCGTCTGAGCAGAGTTTAATCTTATACAGAGAACACAATCTATAAgtacacattaataaaaatgaaaatacccaaatactgttttacaataagcatattaaacaaacatacactTTTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80578 lncRNA upstream 349885 48519069 ~ 48520282 (+) True G59772
TU80540 lncRNA upstream 391404 48478320 ~ 48478763 (+) True G59735
TU80539 lncRNA upstream 392057 48477837 ~ 48478110 (+) True G59734
TU80538 lncRNA upstream 435964 48433973 ~ 48434203 (+) True G59733
TU80537 lncRNA upstream 438936 48430922 ~ 48431231 (+) True G59732
TU80597 lncRNA downstream 28092 48907715 ~ 48908027 (+) True G59788
TU80602 lncRNA downstream 42967 48922590 ~ 48925434 (+) True G59793
TU80608 lncRNA downstream 48835 48928458 ~ 48928806 (+) True G59798
TU80667 lncRNA downstream 153214 49032837 ~ 49035805 (+) True G59853
TU80669 lncRNA downstream 156990 49036613 ~ 49037045 (+) True G59855
XM_022670808.1 mRNA upstream 451955 47998093 ~ 48418212 (+) True cacna2d3
XM_022670809.1 mRNA upstream 451955 47998093 ~ 48418212 (+) False cacna2d3
XM_022670810.1 mRNA upstream 451955 48093612 ~ 48418212 (+) False cacna2d3
XM_007237001.3 mRNA upstream 936556 47927955 ~ 47933611 (+) True LOC103038409
XM_022670807.1 mRNA upstream 976212 47880396 ~ 47893955 (+) True il17rb
XM_022670826.1 mRNA downstream 323645 49203268 ~ 49268872 (+) True cep350
XM_022670828.1 mRNA downstream 323645 49203268 ~ 49268872 (+) False cep350
XM_022670827.1 mRNA downstream 323645 49203268 ~ 49268872 (+) False cep350
XM_022670830.1 mRNA downstream 323645 49203268 ~ 49268872 (+) False cep350
XM_022670831.1 mRNA downstream 393371 49272994 ~ 49308775 (+) True LOC103029228
TU79888 other upstream 1988276 46852364 ~ 46881891 (+) True G59257
TU79487 other upstream 3080013 45789711 ~ 45790154 (+) True G58971
XR_002650090.1 other upstream 4003329 44852780 ~ 44866838 (+) False LOC103029434
TU79126 other upstream 4269207 44595233 ~ 44600960 (+) True G58696
TU79125 other upstream 4269207 44595922 ~ 44600960 (+) False G58696
TU80616 other downstream 118537 48998160 ~ 48998471 (+) True G59806
TU80792 other downstream 543893 49423516 ~ 49437613 (+) True G59961
XR_002650102.1 other downstream 1759871 50639494 ~ 50652274 (+) False LOC103045694
TU81516 other downstream 2396577 51276200 ~ 51286140 (+) True G60481
TU81517 other downstream 2402367 51281990 ~ 51286140 (+) False G60481

Expression Profile