RNA id: TU80667


Basic Information

Item Value
RNA id TU80667
length 1559
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G59853
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49032837 ~ 49035805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgctactgcgctgctggtgcgcttctatcggatctgctgctgctgctactaataatagtgatattgataataatgatgCCGATGTTACTCTTTATTTTGTAGCACCTTCATACGTTTCAATGCAGCTCATCGTGTGCTGTACATGGAATAAGCacgaaaaataaatatgtaatggtTCATAATAATGCTAGTGGTGCTAGTACTAATTAGACATAATGCTAGAATACGAACTGATGTACAATGAATTGTCCAACTgtagtatattatttattggtatattatttatataaaccatacataatgataataataataatggtactGCTGATACTCTTACGAATTATTGTACCTGTAAAATGGATTAGTTGTTAAAGCTTAGTTTAAAGGAATATGTCTTCCTCTGCGTTTTAAAACTGTTTGCTGCTGACCTGCTTCCCGGCTTATCTTCTTCttaccttttcttttctatttaatCTTCTTatcttttctgttcttctgtgttttgatccgtatatagtgtgtttctttattcttactgttctttatttcttatgaatcgtgctgttgctgctggatgtctacatTTCCTTAGGGCTATTTCATATCTATGTATCtgtatctttatctgtctctgggTTCGCGATTTCGCTTGGGTGCTTTTCGTGTGTTCTCTGTTTGCTGTGTCGTTCGTGGCTTTTCTAGTCTCGCTTTCTTGGTTGTGGTCCGGTATTTCTCATTGTTCTCCTCGGCGCCGTTTCTTCGGCTGCGCTCGGTGCGAGCGCCGCTCTGTTTGTCGGTTTTGGGTATTTATTTCCAAGGGCGATAGTTTGCCGACTGTTGGCTATTAATTTTGACCCTCGCCCCTGGATCTGCCTCTCAGTTCTGTACGAAATGATCGGTGGTGATCGCGTGCgtttcattactttttattttctctgaaattattaataaaatacgtTGTGACCGCGAAGCTGTGATCACGATCCTCATTTAAGTTGTTCTTTCTGCACTCCGATTATGTCATTGCTCAATTTAATTACCTGGGACTcagtaattataaattaatttcataattGGTAACAAACTTTCTCTCTACAAATTATTGATGCCAATTAATAAGGAACGTCGTAATAGTCAGATTATCCGAGTTCGTTTTCTAATCCAGCTATATGCTTACTCCTCAAAGGCATTGCAAAAATCCTCTTCCTCAATTTAATATAGCTTGccatttacagaaataaatctaatttacaaGTCTTATATATTCTCCCTATGTTTCCACTGCATACGGCAGCTTTTATGGATTTAAGCGCACAGGCATTTCACGAGCGCGCGCCgacaatatttatttgatcAGTTCAATGCCTCACGCTGTCTGATTTAAGCTCTACTCCTTCCTTCATTTCTGTTTGCGCGAAACATTCTGTTGCAGATAACAGGGCCctgttttacaattaaaatactaaaagtgcacttCTATTTCTGTCTTCACTTCTGGGGCAGCTATCTGCTTTCACGCTCTTCTAAACTTTATGCGCCTCTGTTTGGTTTCACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80608 lncRNA upstream 104031 48928458 ~ 48928806 (+) True G59798
TU80602 lncRNA upstream 107403 48922590 ~ 48925434 (+) True G59793
TU80597 lncRNA upstream 124810 48907715 ~ 48908027 (+) True G59788
TU80578 lncRNA upstream 512555 48519069 ~ 48520282 (+) True G59772
TU80540 lncRNA upstream 554074 48478320 ~ 48478763 (+) True G59735
TU80669 lncRNA downstream 808 49036613 ~ 49037045 (+) True G59855
TU80700 lncRNA downstream 203422 49239227 ~ 49271983 (+) True G59883
TU80712 lncRNA downstream 309309 49345114 ~ 49370251 (+) False lhx4
TU80802 lncRNA downstream 416717 49452522 ~ 49453328 (+) True G59970
TU80804 lncRNA downstream 418624 49454429 ~ 49455103 (+) True G59972
XM_022670808.1 mRNA upstream 614625 47998093 ~ 48418212 (+) True cacna2d3
XM_022670809.1 mRNA upstream 614625 47998093 ~ 48418212 (+) False cacna2d3
XM_022670810.1 mRNA upstream 614625 48093612 ~ 48418212 (+) False cacna2d3
XM_007237001.3 mRNA upstream 1099226 47927955 ~ 47933611 (+) True LOC103038409
XM_022670807.1 mRNA upstream 1138882 47880396 ~ 47893955 (+) True il17rb
XM_022670826.1 mRNA downstream 167463 49203268 ~ 49268872 (+) True cep350
XM_022670828.1 mRNA downstream 167463 49203268 ~ 49268872 (+) False cep350
XM_022670827.1 mRNA downstream 167463 49203268 ~ 49268872 (+) False cep350
XM_022670830.1 mRNA downstream 167463 49203268 ~ 49268872 (+) False cep350
XM_022670831.1 mRNA downstream 237189 49272994 ~ 49308775 (+) True LOC103029228
TU80616 other upstream 34366 48998160 ~ 48998471 (+) True G59806
TU80591 other upstream 153214 48870167 ~ 48879623 (+) True G59782
TU79888 other upstream 2150946 46852364 ~ 46881891 (+) True G59257
TU79487 other upstream 3242683 45789711 ~ 45790154 (+) True G58971
XR_002650090.1 other upstream 4165999 44852780 ~ 44866838 (+) False LOC103029434
TU80792 other downstream 387711 49423516 ~ 49437613 (+) True G59961
XR_002650102.1 other downstream 1603689 50639494 ~ 50652274 (+) False LOC103045694
TU81516 other downstream 2240395 51276200 ~ 51286140 (+) True G60481
TU81517 other downstream 2246185 51281990 ~ 51286140 (+) False G60481
TU81531 other downstream 2367529 51403334 ~ 51409013 (+) False hdac6

Expression Profile