RNA id: TU80712


Basic Information

Item Value
RNA id TU80712
length 357
lncRNA type sense_over
GC content 0.42
exon number 2
gene id lhx4
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49322278 ~ 49370251 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAATTTTTTGTATTGTACTGAGTGTGAATCCATTCCTCTCAGTATCTCCTGAAGGGATGTTCTGGAAAGCTGTACTGAAGCACCTAAAATAAGCCACCCGAGCCGATCCgaccaacacacaacacacagaccAGATCCGGTTTCCTGCGTCGCCTCTGAACTTTTCAGTGTTAATTGTTGTAAATTTTTGTACAGTTTCAGAAAGTGTGTGGACAGTCTTGTTTTTATGAGCACTATATTTATTGCCATGTGTTTGAAAAGAGCACTGAGTCTATTCCTTTATGCCTTCTGTGCAATGGTATGAACTGTGTACAGCCAGATCTATACGgagaaaatgtgtggtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80700 lncRNA upstream 73131 49239227 ~ 49271983 (+) True G59883
TU80669 lncRNA upstream 308069 49036613 ~ 49037045 (+) True G59855
TU80667 lncRNA upstream 309309 49032837 ~ 49035805 (+) True G59853
TU80608 lncRNA upstream 416308 48928458 ~ 48928806 (+) True G59798
TU80602 lncRNA upstream 419680 48922590 ~ 48925434 (+) True G59793
TU80802 lncRNA downstream 82271 49452522 ~ 49453328 (+) True G59970
TU80804 lncRNA downstream 84178 49454429 ~ 49455103 (+) True G59972
TU80809 lncRNA downstream 89198 49459449 ~ 49460506 (+) True G59976
TU80819 lncRNA downstream 108834 49479085 ~ 49479357 (+) True G59986
TU80829 lncRNA downstream 133266 49503517 ~ 49503723 (+) True G59996
XM_022670831.1 mRNA upstream 36339 49272994 ~ 49308775 (+) True LOC103029228
XM_022670826.1 mRNA upstream 76242 49203268 ~ 49268872 (+) True cep350
XM_022670828.1 mRNA upstream 76242 49203268 ~ 49268872 (+) False cep350
XM_022670827.1 mRNA upstream 76242 49203268 ~ 49268872 (+) False cep350
XM_022670830.1 mRNA upstream 76242 49203268 ~ 49268872 (+) False cep350
XM_022670936.1 mRNA downstream 100181 49470432 ~ 49539741 (+) True LOC103028608
XM_007236977.3 mRNA downstream 178393 49548644 ~ 49568835 (+) True sin3b
XM_022670834.1 mRNA downstream 200461 49570712 ~ 49600806 (+) True LOC103028292
XM_007236976.3 mRNA downstream 232540 49602791 ~ 49606898 (+) True ndufb11
XM_007236974.2 mRNA downstream 238348 49608599 ~ 49613480 (+) True LOC103028705
TU80616 other upstream 346643 48998160 ~ 48998471 (+) True G59806
TU80591 other upstream 465491 48870167 ~ 48879623 (+) True G59782
TU79888 other upstream 2463223 46852364 ~ 46881891 (+) True G59257
TU79487 other upstream 3554960 45789711 ~ 45790154 (+) True G58971
XR_002650090.1 other upstream 4478276 44852780 ~ 44866838 (+) False LOC103029434
TU80792 other downstream 53265 49423516 ~ 49437613 (+) True G59961
XR_002650102.1 other downstream 1269243 50639494 ~ 50652274 (+) False LOC103045694
TU81516 other downstream 1905949 51276200 ~ 51286140 (+) True G60481
TU81517 other downstream 1911739 51281990 ~ 51286140 (+) False G60481
TU81531 other downstream 2033083 51403334 ~ 51409013 (+) False hdac6

Expression Profile