RNA id: TU80791


Basic Information

Item Value
RNA id TU80791
length 2311
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G59960
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49544649 ~ 49546981 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aataaaaacaacagcaaacatcAAAAGACACCTGCTGGGCTAAATGTCCATTGGTTGTTCACATATTGGCagctttaaaatgttgaaaatatttaataatattttgtgcacgcacacacacacacacacacacacatatatatacacacttctctgAGCCCCTGCTTTGTGTTCCTCTCTCTGATTGGAGTTGACCTTTGATCCCAGGCCCatttgggctgtgagcacaagcCCGCTATGTTGCGTCTCCACTGGTCCCGCCTGCATGCTTCTTTGATGTTTAActgtaaatactttaatttatttttcatctgGTGTAAAGGAATGAAGCTTAATTTAttgtactaattattattatttaagtccatgttgggggggggggggtacttttattttgctttagaTGAGCAGTATTAAAGATAAATGGGTCGGATTTGGTGGGTCACTCTCCTgcactctgtctctgtgttctgTAGTTGAGCTGTTTATCAGAATAAGACGATGATGTTGTGACTGTGGAACGTGTTTCTGATCACCTGTGACTTTTTCATCGTCATTAGCCACGCCCACTCCAACACCTGACGTATTGATATATACACCCCAGTATCTCATAAAAGAGTtaaattttaaatcatattttcatTATCAGAGTGTTGAAATCAATCAAGTTGAAATGCCCATACATGTTTATCACACTATGTGTACATGTGTATCACACCATGTGTACATTGTGTCACATGTAATATTATAATGCAGTCTCATAGTTAGATAGATATACTAAAAATAACCACTAGATTTAAAGAGACTGAACTAAGATATCACTAATGTCCTTTCCAGTTGATGTCCTTTTTAAGATAATTATTTGCTACACTTTAATAATGATAGCTTACCaagtaaaatcatttaaaatcttGTGATATTATTCATTATGATATTGCTGTATTAAGATGTTTGAATATTATTCAAAACAATATTAAAGAAATCGGATTATTTATGTTGCAATACTTTGAACACTCTTATAATGAGAAGTATTACATACATTTACTAGTTACTCAAATTCCCCTGTAAGCAaatgcataaaatataaaatatttttacaaaataaatacattaaaatatttgggCTACAGTATATTGTGGTACGTCACATGTTGGTTTGGGCGATCAACAGCCAATGAGAATTAGAGTTGGTGAATATTAGACCAACATCCATTCAGTGCCGTGTCGAGTTCAGTGATGAAGTTAACCTTCCCAGCGGAGGGTGATTTTTTTGTACATGAAATTTTTTAAATACCTTCAACAATCCCCCAATAATCCCTGTATCCTGACATGACGCTGTTTTTTATCGTTCCGGAGGAATCGGAGTTATGTGTCGGTTTATCTGCCTGCTAAACCCATGATAATGTTGAAGTGCTCGATACTgtatctctgcatctttttctatCTTCTCGATGTTGTACCTTTTCTTAAATTTCCGACTGTGACGATGTTTGTAGTAAATAGACGACTGTACTTTTGAGTCCTAAGAGAAATCTAAAGTAGAAATTAGATAAACTATAGTGGTTCTGTGTTTGAaaagataaacagagaaaaacgtCTTACAGTTCCCTCTTTGCGGAGTAGTTTGTAAATGTTGGGTGTACTATTCTCTTCTATGATGGTTGTTCTGATGGTATCATTTGTATTTCTGTACACACTTTGGTGATCCTGTCATTACTTGGTTTTATAAACCAcgcttatttttaaatcctgcATTATGTGTCTGCCTCTTTATTTAACCCTTCACCTGGACCAACATTCATACCACCTGAACCACCAGTTACACCACCTAAACTACCAGTCGCACCATCTGAACCAACAATCGCATCACCTGAACCACCAATCGCCCCACCTGTACCACCAATCGCACCAACTGAAACAAACAATTACACCACCTTAACTACCAATTGTATCACCTGATCAGCCACCAGAAGACACAAGTTATCTGGAAAGGCTTTACACTAGGTGGAACCACTAGTAACGCAACCTCAACCACCGGTCGCTCACCATTTGAACCACCAATTGCACCTTCTTAagtacattttgcattgcaACTGAAGATATGCAGAGagctatatatttaaatatatgttacatactttaaatatagtgtatatgtttataaaatatgttGAACAGATACATTCTTggctgttgttttttaataagacaGCCTTGAGCTAGCTGTATTTCTAGGCATTTGGAGCTGCTTCTGCTCCTCTACACCTGTATTCTCACAGGGAACATCACAGCTTGGTTTAGGAACAGCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80829 lncRNA upstream 40926 49503517 ~ 49503723 (+) True G59996
TU80819 lncRNA upstream 65292 49479085 ~ 49479357 (+) True G59986
TU80809 lncRNA upstream 84143 49459449 ~ 49460506 (+) True G59976
TU80804 lncRNA upstream 89546 49454429 ~ 49455103 (+) True G59972
TU80802 lncRNA upstream 91321 49452522 ~ 49453328 (+) True G59970
TU80860 lncRNA downstream 133661 49680642 ~ 49683666 (+) True G60013
TU80864 lncRNA downstream 208302 49755283 ~ 49755595 (+) True G60017
TU80880 lncRNA downstream 320637 49867618 ~ 49918681 (+) False LOC103025235
TU80883 lncRNA downstream 369670 49916651 ~ 49990417 (+) False LOC103025235
TU80898 lncRNA downstream 392535 49939516 ~ 49988936 (+) False G60034
XM_022670936.1 mRNA upstream 4908 49470432 ~ 49539741 (+) True LOC103028608
XM_007236978.3 mRNA upstream 199174 49322278 ~ 49345475 (+) True lhx4
XM_022670831.1 mRNA upstream 235874 49272994 ~ 49308775 (+) True LOC103029228
XM_022670828.1 mRNA upstream 275777 49203268 ~ 49268872 (+) False cep350
XM_007236977.3 mRNA downstream 1663 49548644 ~ 49568835 (+) True sin3b
XM_022670834.1 mRNA downstream 23731 49570712 ~ 49600806 (+) True LOC103028292
XM_007236976.3 mRNA downstream 55810 49602791 ~ 49606898 (+) True ndufb11
XM_007236974.2 mRNA downstream 61618 49608599 ~ 49613480 (+) True LOC103028705
XM_022670937.1 mRNA downstream 80113 49627094 ~ 49643347 (+) True LOC103027985
TU80792 other upstream 107036 49423516 ~ 49437613 (+) True G59961
TU80616 other upstream 546178 48998160 ~ 48998471 (+) True G59806
TU80591 other upstream 665026 48870167 ~ 48879623 (+) True G59782
TU79888 other upstream 2662758 46852364 ~ 46881891 (+) True G59257
TU79487 other upstream 3754495 45789711 ~ 45790154 (+) True G58971
XR_002650102.1 other downstream 1092513 50639494 ~ 50652274 (+) False LOC103045694
TU81516 other downstream 1729219 51276200 ~ 51286140 (+) True G60481
TU81517 other downstream 1735009 51281990 ~ 51286140 (+) False G60481
TU81531 other downstream 1856353 51403334 ~ 51409013 (+) False hdac6
TU81766 other downstream 2218110 51765091 ~ 51765620 (+) False otud5

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072164 True 2987 lncRNA 0.36 2 NC_007119.7 14241585 ~ 14246353 (+)
bowfin (Amia calva) TU180159 True 7024 lncRNA 0.40 1 CM030140.1 3581082 ~ 3588105 (+)