RNA id: TU81516


Basic Information

Item Value
RNA id TU81516
length 1605
RNA type TUCP
GC content 0.53
exon number 9
gene id G60481
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51276200 ~ 51286140 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGTGGCGGTCTTGCTGAGGGAGTCTATTGAAAAGTCCAGTAGTGGAAAATCCAAACAGCAAACCAGATTTACTCATTATACCAAAATGTGATCTCAAACAAGTAGCAAAAATagtatttattaaagttattaaatgTTACAATAATAACACCACATTTGCATTAAAACATACTtatacaaaacatacaaaacagtgaaaactgtaaaataaaagtctctaCATATGACAAATGTTGTCCAGTGGTCTGAATCAGTCTCCTTCATCTTTTGGTGGTGGAGCACATAAGGATCTCCTGCTCCTCAGGCTGTACCGCGGCTGGTTGTCCTCCACCAGCACACTGTAGACCAGTGCGGAGGAGGGGCGTCCGCGAGAGCCAGAAGAACGGCGTGGTCGTCTTTTAGGGATCTCCAGGGTGCTTAAAGCTTCCAGTGGAGCTAAGTTTTCATTCTGTCTGCTGCTATGAAGGCCAGTAAAGGAGGGCAGAGTGGCTTCTACTGCACCAGAGGGATGCAGGATGACCAGACTGCTCTCCTGTTCCTGATCCCACTTTTCATCCCACTGCTTCTGCCTGGGCCTTTTCCAGATATCCATAGAGCCCGACAGCCGTTCTGCTTTCCTCAAGGTCTGCTGAAGACTGGAGCGGGTCTCTTTCAGCTCCTTCAGAATCTCCAGACTCTCTCTGTTCACGTTCCGAAAGCGCAGAGCGAAGTACAATAGAACAAAGCTGCCAATCACCAGCACCATCCTACAAATCAGCCTCTCTAAATGTGCGGCGAGTGGAGGTGAGGAGGAAGGAGGCGCAGAAGGCCAGAGCGTTGTAGAACAGGGAGCTGAGGGTGTGTGACTCAGACATGATGAAACTCTGGAGAAAAGCCATGCGGTTAAAGATTTCCGCAAACGCCACCTGCTGCTCCTGCACGGAAAGCCTCATCTCCGCAAACACGTCCCTCAGACCGTTTGTGGAGTCCTGAAGGGTGTTTTTGAGCTCCTCTCCGTTGCGCAGGATGGTTTCCTGTGATTTGAGGGCTGCGCTCTGGGCCTCTACAAGATCCTCCGCCATCCTCTGAGTGGACGCCAGCTGCTCGGCCACACTGGCTGAATTCTCGGTCAACCTGTGGATGGTGTTTTCTGCCCGATTCTGCCACTGCTCGCTCTGCAGGTAATGGCAGATGCTGTGGGCGTGGGTGAAGAACTCTGTGTAGGTGTTGAACGCGACAGGATCCATGTCACGGGTGCAGACTTTAACATCGCTGCCCTCAGGGCACTCTGGGAAATTACGTCCGGACCTCCTCAGGTGGCAGTGGGTGAAGGCCACGGCTATCATGCTCTGCATGTCCGCGGTGAACTCCCTGCAGCCCGTGTGGATCTTCTCCAGAGCCCGGCTCCAGCACTCCCCGTACCGGGGCTGCACCGCCAGATCCCGCACCTTCCGCAGCTCATCCCGGCCCTTCTCCTCCAGGGTTTTATCCGCGGCCACGGCGAGCAAAACCCCAGCAAACCACCACAACTGCACCCCAACGCGCATGGCTTACCGCAGCTAACAGGCCCTGGATTCAGTAATGGGAAAACCACAGCGTGGAAGCCACGCCCACAAACCCCGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81509 lncRNA upstream 24391 51213528 ~ 51251809 (+) True G60474
TU81508 lncRNA upstream 68330 51205668 ~ 51207870 (+) True G60473
TU81500 lncRNA upstream 111301 51160052 ~ 51164899 (+) True G60468
TU81498 lncRNA upstream 111380 51162330 ~ 51164820 (+) False G60468
TU81156 lncRNA upstream 202273 51072952 ~ 51073927 (+) True G60221
TU81532 lncRNA downstream 135018 51421158 ~ 51425440 (+) True G60489
XR_002650105.1 lncRNA downstream 188497 51474637 ~ 51479136 (+) True LOC111192704
TU81568 lncRNA downstream 237462 51523602 ~ 51527462 (+) True G60505
TU81572 lncRNA downstream 254228 51540368 ~ 51604769 (+) True G60506
TU81579 lncRNA downstream 266962 51553102 ~ 51553513 (+) True G60512
XM_022670941.1 mRNA upstream 116893 51040369 ~ 51159307 (+) True LOC103036200
XM_022670858.1 mRNA upstream 383393 50877425 ~ 50892807 (+) True LOC103041214
XM_022670857.1 mRNA upstream 383393 50877425 ~ 50892807 (+) False LOC103041214
XM_015602382.2 mRNA upstream 406175 50859871 ~ 50870025 (+) True LOC103042439
XM_022670856.1 mRNA upstream 417686 50836872 ~ 50858514 (+) True LOC103041521
XM_022670862.1 mRNA downstream 1450 51287590 ~ 51311463 (+) False mecp2
XM_007245835.3 mRNA downstream 1450 51287590 ~ 51311463 (+) False mecp2
XM_007245834.3 mRNA downstream 1452 51287592 ~ 51311174 (+) True mecp2
XM_022670861.1 mRNA downstream 31121 51317261 ~ 51337191 (+) True irak1
XM_022670864.1 mRNA downstream 52253 51338393 ~ 51355653 (+) False hcfc1
XR_002650102.1 other upstream 623926 50639494 ~ 50652274 (+) False LOC103045694
TU80792 other upstream 1838587 49423516 ~ 49437613 (+) True G59961
TU80616 other upstream 2277729 48998160 ~ 48998471 (+) True G59806
TU80591 other upstream 2396577 48870167 ~ 48879623 (+) True G59782
TU79888 other upstream 4394309 46852364 ~ 46881891 (+) True G59257
TU81531 other downstream 117194 51403334 ~ 51409013 (+) False hdac6
TU81766 other downstream 478951 51765091 ~ 51765620 (+) False otud5

Expression Profile