RNA id: TU81777


Basic Information

Item Value
RNA id TU81777
length 230
lncRNA type read_through
GC content 0.39
exon number 2
gene id G60645
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51821586 ~ 51834142 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctggaaaatgaaatccacatctccataaaagttgtcatgagcagagggaagaagcatgaagtgctgtaagggaattttgtggggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacatgtctctttatccaaacatcactgatcatcagtaaattttacatttcatttgtaaatcaagggagcagagtctggagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81760 lncRNA upstream 100113 51723733 ~ 51723998 (+) True G60634
XR_002650122.1 lncRNA upstream 106355 51717048 ~ 51717756 (+) True LOC111192743
TU81756 lncRNA upstream 106363 51717048 ~ 51717748 (+) False LOC111192743
TU81612 lncRNA upstream 109927 51713200 ~ 51714184 (+) True G60536
TU81579 lncRNA upstream 270598 51553102 ~ 51553513 (+) True G60512
TU81782 lncRNA downstream 15516 51849658 ~ 51850183 (+) True G60649
TU81773 lncRNA downstream 61830 51895972 ~ 51900107 (+) True G60643
TU81774 lncRNA downstream 62508 51896650 ~ 51900107 (+) False G60643
TU81785 lncRNA downstream 97455 51931597 ~ 51932374 (+) True G60652
TU81806 lncRNA downstream 183649 52017791 ~ 52018077 (+) True G60661
XM_007245849.3 mRNA upstream 66211 51733007 ~ 51757900 (+) True LOC103034896
XM_007245848.3 mRNA upstream 115408 51676409 ~ 51708703 (+) True elk1
XM_007245846.3 mRNA upstream 154865 51663968 ~ 51669246 (+) True uxt
XM_022670876.1 mRNA upstream 154865 51663968 ~ 51669246 (+) False uxt
XM_022670875.1 mRNA upstream 171738 51631165 ~ 51652373 (+) True usp11
XM_007245851.3 mRNA downstream 2236 51836378 ~ 51850614 (+) True slc35a2
XM_022670880.1 mRNA downstream 17882 51852024 ~ 51886071 (+) False bcap31
XM_022670879.1 mRNA downstream 17883 51852025 ~ 51886071 (+) True bcap31
XM_022670968.1 mRNA downstream 160001 51994143 ~ 52014767 (+) True LOC103046554
XM_022670884.1 mRNA downstream 235399 52069541 ~ 52116270 (+) True cdk16
TU81766 other upstream 58491 51765091 ~ 51765620 (+) False otud5
TU81531 other upstream 415098 51403334 ~ 51409013 (+) False hdac6
TU81516 other upstream 537971 51276200 ~ 51286140 (+) True G60481
TU81517 other upstream 537971 51281990 ~ 51286140 (+) False G60481
XR_002650102.1 other upstream 1171837 50639494 ~ 50652274 (+) False LOC103045694

Expression Profile