RNA id: TU81806


Basic Information

Item Value
RNA id TU81806
length 241
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G60661
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 52017791 ~ 52018077 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgtgaAAAATGCTTCTGATGTCTGAtccattcaccaccactgttattattatatttctctCTCAGTATATATTTCCAGAACAGGGCTATCTAATGTAGTAAACCACAGTAAATCACTGTAAATGACTGACTCTCTTTACattattatctatctattattattattattattattattattggatatTTGCATGCAGATATGGCTTACTTGTACAATCAGCTGCTTAATGTTATCTTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81785 lncRNA upstream 85417 51931597 ~ 51932374 (+) True G60652
TU81773 lncRNA upstream 117684 51895972 ~ 51900107 (+) True G60643
TU81774 lncRNA upstream 117684 51896650 ~ 51900107 (+) False G60643
TU81782 lncRNA upstream 167608 51849658 ~ 51850183 (+) True G60649
TU81777 lncRNA upstream 183649 51824111 ~ 51834142 (+) False G60645
TU81847 lncRNA downstream 178143 52196220 ~ 52314109 (+) False G60688
TU81848 lncRNA downstream 293235 52311312 ~ 52314109 (+) True G60688
TU81860 lncRNA downstream 300770 52318847 ~ 52328328 (+) True G60696
TU81865 lncRNA downstream 318920 52336997 ~ 52343123 (+) True G60701
TU81880 lncRNA downstream 439435 52457512 ~ 52461465 (+) True G60712
XM_022670968.1 mRNA upstream 3024 51994143 ~ 52014767 (+) True LOC103046554
XM_022670880.1 mRNA upstream 131720 51852024 ~ 51886071 (+) False bcap31
XM_022670879.1 mRNA upstream 131720 51852025 ~ 51886071 (+) True bcap31
XM_007245851.3 mRNA upstream 167177 51836378 ~ 51850614 (+) True slc35a2
XM_022670878.1 mRNA upstream 185520 51828354 ~ 51832271 (+) True LOC111192705
XM_022670884.1 mRNA downstream 51464 52069541 ~ 52116270 (+) True cdk16
XM_022670885.1 mRNA downstream 51465 52069542 ~ 52116270 (+) False cdk16
XM_022670886.1 mRNA downstream 51465 52069542 ~ 52116270 (+) False cdk16
XM_007245819.3 mRNA downstream 108021 52126098 ~ 52132072 (+) True tsr2
XM_007245833.3 mRNA downstream 450314 52468391 ~ 52478268 (+) True LOC103029799
TU81766 other upstream 252171 51765091 ~ 51765620 (+) False otud5
TU81531 other upstream 608778 51403334 ~ 51409013 (+) False hdac6
TU81516 other upstream 731651 51276200 ~ 51286140 (+) True G60481
TU81517 other upstream 731651 51281990 ~ 51286140 (+) False G60481
XR_002650102.1 other upstream 1365517 50639494 ~ 50652274 (+) False LOC103045694

Expression Profile