RNA id: TU81865


Basic Information

Item Value
RNA id TU81865
length 3574
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G60701
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 52336997 ~ 52343123 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCTTCCCACTCACTGGTGTCTTTTTAGGAATATTGCAAATTGAAGTATACagcaaaatatttacatttacattaattagaTTTGAAATCTTCAAAAAGTGAATGGAATTGCTtagtatacatttatataccGGACAGCTCGTGATTTAAACAATGGGTAAATCAGTCCAAACGATGGATGCAACAAtgtcaaacatttttttgcaccaCAAAGAGTGGCAACAACATGgtatctagaaaaaaaaacaaatcaaacatatattttatgtactgtatttgccttggcatttctgaatattttacCGTTGTTTACCTCAGTTTTGCTTTAaatgtttgtcttttttgtttttccgtACAGCTGAGCGACATTACAGATTACAGAAGGTCAGCAAACGCAGGTGTGCAGTGagaataaaaaaacgATGAAGTCTGATGCTGCCTATGCAGCCGTGCTATTGGTTCTAATAAGGACGCAGCAAAGTGGCCTACAAATCAGAGCAGCGTTCAGTAGTCTGGTCCTGAGACGAGCATGGCAGCATTTGGCGATAAGtttGATGGATTAGCTAGCTGGTCTACCAGCATGACCAGTCTAACAACAGCCTCGTCTTACTGGATATCTCACAATCACCTTGACCACCTTAACTCATTAACAATGGAGCAGATCTTCATCACACGATCTTACAAGATCTGCTGAGAACATCTGACATCAATGCAGTCAGCCTCTGAGGTGAGTTAACCACACCTGCTTTCCTTTCTGGCTCAGTTTCTAGAGGGATTTGTAAGATTAGAGCACTAATGTAGGAGTTTATGTAGTTTTTAACAGAAACTGAAAGCTAGTACCCGCATGCATCTGAATAAGACAGTTAAACGTTATAAAACAGCAATAACACTATCAAAAAGCAGGacactgatacactgatttggATTAGAGAGCAATCCTGACTCATCTTTTCTGTATTTTGCAGTGTTTCAGTTTTAGCCTTTATAGAAAGTACAATCTGGTGGtgagaaaacacacagacacatgttTGCACTACACTGAATGTGGTTTCCATGttcagctaaagctaaagtaaGGTGTTCTCCACTTCTCGTTGCTGTTAGGCACGATGGTTAACAGTTGGCATCCTGGTTTGATTACACCGTTCGGTAGGTCTCGCATAGCATtcaataaattacattacaacagagagaaacagggacATTCCCACTCTATTCCAACAGCATCCCCTCCATTCACAACCTTCCAGTCCACCAGAGCTGAGTAATGACCTCTGCTGTCCGCTGACCCGCGTAAACGCCTTACAATGTGGAATATTGAACACTGAGACACTAATGAGCATCAGTCAAATCCTGCAGCACACTCTGCCCTGGGCCAAATGAGCTTTTGCATGAGTCTGTGATGTGGGTTCTGATTTTCATACACGGCTGCTTCTCTAAAGGCTGGAGCTCCTCCTATTGGTCACTGTGAGATATAACACCTGGGGTAGGTAGGTCCCCCAGTCATTTATTCAGTCAGTGTTACAGTCAGTAACAGGGAACAGTCGTGTATAAAAGCAGCAGAGAGCACGAGCGTCACCAGTGAAGGTACAGCAAAGAAGTGCAACGGCAGCTGAAACACAGCTGTTCAGTGTCTAAAGGCTAGAACACGTCCAgaaccaacaaacaccatctaCTTCCtgacaacacaaaaaaaatagattctAGATTCTACATTCTAGAAGTGTGTTAATGAGGGGGAAAATCTAGATcaaagtgaatgagagagaatgtTTTAGAAAAGCGTAaatggggggtggggggggcattctagaacagtttGAATAtgagagaacattctagaacattcAGAATTGGAAGAACACTGTTGGACACTGAGGAATGGGCAACCGTTTACAACACTAAATGAAAACTGAATTTGGGGAAGAATCCTAGACTTCTCTAGAAAAGTGTGCATGGGGGGAATCCTAGAACTGTGTCAATGGGGAGATTCTAGAATAATGTGCATGGGGAAAATATTCTACAACAGTGTGAATAAAGAGAATATTCTAGAGCAGCATGATCTGGGCATTCTACAACACTGTGAACAAGAAGGATATTCTAGAACTGTGTAAATGACGAGAACGTTGGGCACCAGTCTGAAGTGGGACATTCTAGAAAAGTGCATGGGGAGAATATTCTAGAAAAATGTGAATGGGGGACCTTTAACTGAAAAACAAATTTGGGGAAAGGAGGTTTCTAGAAtattgtacagtacagtgtgcaTTAGAAGAATATTTCTAGAACTGTGTAAGTGGGAAgaatattctagaacagtgtgaacagggagaatattctagaacagtgtgaatggggCAAAtactctagaacagtgtgaatgcagaaagtattctagaacagtgtgaatgtagatagtattctagaacagtgtgaatggggTGACACTGAGGATGGTAGCAACAGTTTAGAACACTTACTGAAAACTGAATTTGGGGAAGCGTTCTAGAATACTCCAGAACATCATGGAAtggagaacattctagaacagtgtggatAGGGAGAATATTCTAGAATAGTGTGAATTAGAAGAAtactctagaacagtgtgaattaggAGAATgatctagaacagtgtgaattggTAAAAtactctagaacagtgtgaattagcAAAATACTCTAGAATAGTGTGAATGGAGATAATATTCTGCTAGCATGTACTGGACTGTTATGAATGAGGGACAGACAGTATTCTAGAACATTCTGATTTAggaagaacattctagaacagtgtgaataggGAGAACCATGGAACATTGTAGAATAATTCTTGAACAGTCAGGATGGTGGGATGCTccataatctaaaaaaaatgcatataaatcTACACAAAAGAGACGTTTGTTGTTTGAtggttggtgtttgttggtgctggtcagagagctgtggttttataACAGCATGGACTGTGGAAaacattcaaatttaaattttaaatttcatgGTGGAAGGATACATGCAGGATGCTGTAAGGCAAATAGTCCCTGAATTTACATTGATTTTACCATCATAATCATACCACAGAAAACTCAGCAGACTCGAGTAGCATCCCTGCTGAATttgtaaatgaacagaaaaggtcagtttttatgtttgtttgtttttataaatgatATTTCCACCATCTCTACCAATCAATCAAAGTCCACAGTCCACTCCTGACAGAACTCTCAGGTCACTGCTGGGTTATTAAAAGTCAGGAGCTCATTACAGACAGTTCTGAGAAAAGCTTCTCCAGGTTCTTCTACAGATCTGGTAACACTGATATAAACACAGGCGCTGTTTTCTCTACACACAGCTGAAGATCTGACCTTGTGCTCCACACTGTTCTGTTTCCCACCACAACAGCTGGGTGAGAGAACTGGTTTGGCTTCAGAAAAGAGAGTGTTTTGGATTTAGTGCACTCTTAATATGTGTATAAAGGTGCTACAATAGGTCTGTTAGTGAaggacattttttgtttaataaaaaataacattttgtaaaactattttttcagtgagtaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81860 lncRNA upstream 8669 52318847 ~ 52328328 (+) True G60696
TU81847 lncRNA upstream 22888 52196220 ~ 52314109 (+) False G60688
TU81848 lncRNA upstream 22888 52311312 ~ 52314109 (+) True G60688
TU81806 lncRNA upstream 318920 52017791 ~ 52018077 (+) True G60661
TU81785 lncRNA upstream 404623 51931597 ~ 51932374 (+) True G60652
TU81880 lncRNA downstream 114389 52457512 ~ 52461465 (+) True G60712
TU81890 lncRNA downstream 142826 52485949 ~ 52487552 (+) True G60717
XM_007245819.3 mRNA upstream 204925 52126098 ~ 52132072 (+) True tsr2
XM_022670884.1 mRNA upstream 220727 52069541 ~ 52116270 (+) True cdk16
XM_022670885.1 mRNA upstream 220727 52069542 ~ 52116270 (+) False cdk16
XM_022670886.1 mRNA upstream 220727 52069542 ~ 52116270 (+) False cdk16
XM_022670968.1 mRNA upstream 322230 51994143 ~ 52014767 (+) True LOC103046554
XM_007245833.3 mRNA downstream 125268 52468391 ~ 52478268 (+) True LOC103029799
TU81766 other upstream 571377 51765091 ~ 51765620 (+) False otud5
TU81531 other upstream 927984 51403334 ~ 51409013 (+) False hdac6
TU81516 other upstream 1050857 51276200 ~ 51286140 (+) True G60481
TU81517 other upstream 1050857 51281990 ~ 51286140 (+) False G60481
XR_002650102.1 other upstream 1684723 50639494 ~ 50652274 (+) False LOC103045694

Expression Profile