RNA id: XM_007229137.3


Basic Information

Item Value
RNA id XM_007229137.3
length 1708
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC103034472
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35191804 ~ 35195665 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAAACTCACTGGATCCAGTATAACTCTCttcaccagtatcaccagtatcaccagtatcaccagtatGGGTTATTCCAGTATTCTGATTGGTCTGCTGATCGCCATGGCACATGGCCAGACTACAACAGaaaatCCATCTGAAACTGTAGAAACTACACAAATACAGGAAATCACTGCAGAAACACCGGAGATGATCACAAACAGCACCAccaATCAACTAACTAAAGAAATCACTGCAGAAACTACAGAGGAAACTCCAGCCAACGAGACGCCAACCTCCCagactacaactacaactacagtGTATGAAGAATCTCCTTTTCCCACTCACGACCCTCCGTTTATAGACGTGATGCCAACCACCCAGACCACAACTACAACTACagatacagaaacagaaacaactCCAGAAACAACTACAGCTAAAGATACAGAAACAACTACAGATACAGATTCAACTACAACTCCAGAAACAACTCCAGAAACAGATTCAACTACAACTCCAGAAACAACTACAGATACAGAAACAACTACAGCTAAAGATACAGATTCAACTCCAGAAACAACTACAGATTCAACTACAACTCCAGAAACAACTCCAGAAACAACTACAACTACAGATACAGAAACAACTACAGATACAGATTCAACTCCAGAAACAACTCCAGCtaaagatacagatacaacTACAGCTTATGAAACCTCTACAACTGAAATCTTGTTTACAGAGGGTCCTGTCACTACTGCATCAACTACAACATATGAAAACACCACGCCGCCGTTCTTCACCACAGAACACGGTGGCACTACTGCATCAACTGGAAATGTTGAAACCACTACACCCCAGTTCTTCACCACAGAGAGCACTACTGCTGCTGCATCAACTACAACCTACAAAAACTCCACACCCCAGTTTACCTCCACAGAGAGCACTACTGCTGCATCAACTGGACAACACCAACACTCTACACCCCAGTTCTTCACCACAAAGCACACTACTGGCACTAGTGAGCCACCTACAGTGTATAAAACCTCTGCAGCCCAGCCTCCTACAACCAGACGCTACGATGGAACCAGTCCTCCATCTACAGTGAAGAATCtgaATTTTCACACAATAACAAGCAACCTGGAGGTGGAGCTTCTGGCCCCAGAAGATTCGACGGAAGAGGAACGTCAGCGTGCACTATATGAAgCTGCTTGTCGACTGAACAACTACCTGACAAAAACATACGATGACATCGACTCTGTAGAAATAATAAGCATCACCCCAGATGAAGGGTACTGGTGCCTGGAGTCTCACAGGAAGTGATTAATCAGTGGAGAAGATCAAATCTCATGTTTTATTTAGAAACCGTGTTAAACAGTAGTTCTGTCTATAAAATggcatttattaatatttctgaCCAGTGATTTATTAACCAGAGCTAATCTGTATGAGTTTGGGATGGAATCACATAAATATCTGTGTTCAAATATCTATAGATATGCAGGATCTTCTGATTCTGGAGAGAATTTACTTGGAATTGTTGAGTATTTCTcagaggatttgattgcatttattgAAAAGAGCACAGCTTACATCAACTCAAAACTTTCAGGATTATTATAGAATACAGAACTTCCTttactcagtaaactcagtatcTCATAATAGCTATTTCATATCTTACACACTTATCAATTATTGTACATTAtcaatatgtatat

Function

GO:

id name namespace
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76122 lncRNA upstream 14825 35171898 ~ 35176979 (+) True G56459
TU76100 lncRNA upstream 23783 35111041 ~ 35168021 (+) True G56444
TU76105 lncRNA upstream 55756 35133583 ~ 35136048 (+) True G56448
TU76101 lncRNA upstream 76048 35114985 ~ 35115756 (+) True G56445
TU76089 lncRNA upstream 98466 35090736 ~ 35093338 (+) True G56437
TU76134 lncRNA downstream 1780 35197445 ~ 35199268 (+) True G56465
XR_002650116.1 lncRNA downstream 22226 35217891 ~ 35218782 (+) True LOC111192732
TU76149 lncRNA downstream 51136 35246801 ~ 35249651 (+) False ikbkb
TU76151 lncRNA downstream 51136 35246801 ~ 35272528 (+) False ikbkb
TU76152 lncRNA downstream 51136 35246801 ~ 35254670 (+) False ikbkb
XM_007241248.3 mRNA upstream 102619 35083719 ~ 35089185 (+) True snap29
XM_007241246.3 mRNA upstream 108512 35039169 ~ 35083292 (+) True LOC103037259
XM_022670533.1 mRNA upstream 108512 35039169 ~ 35083292 (+) False LOC103037259
XM_007241247.3 mRNA upstream 108512 35039170 ~ 35083292 (+) False LOC103037259
XM_007231478.3 mRNA upstream 173079 35015117 ~ 35018725 (+) True LOC103047196
XM_022670542.1 mRNA downstream 30820 35226485 ~ 35247343 (+) True ikbkb
XM_007229136.3 mRNA downstream 64255 35259920 ~ 35265350 (+) True enkd1
XM_022670547.1 mRNA downstream 70303 35265968 ~ 35274621 (+) True polb
XM_007229129.2 mRNA downstream 80414 35276079 ~ 35278890 (+) False LOC103032256
XM_007229132.3 mRNA downstream 98258 35293923 ~ 35296002 (+) True mrpl40
TU76054 other upstream 440241 34713218 ~ 34751563 (+) True G56414
TU75961 other upstream 680162 34505455 ~ 34511642 (+) False fgf17
TU75802 other upstream 1610436 33564828 ~ 33581368 (+) False izumo1
TU76153 other downstream 30831 35226496 ~ 35239100 (+) False ikbkb
TU76213 other downstream 225122 35420787 ~ 35424473 (+) True G56504
TU76490 other downstream 760439 35956104 ~ 35963319 (+) False G56701
TU76991 other downstream 1809608 37005273 ~ 37005798 (+) True G57066
TU77738 other downstream 4848988 40044653 ~ 40046467 (+) True G57664

Expression Profile