RNA id: XM_007229334.3


Basic Information

Item Value
RNA id XM_007229334.3
length 3895
RNA type mRNA
GC content 0.49
exon number 17
gene id rnf10
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31831354 ~ 31843104 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCGGGTGTTTACGGTTCCTGTTTGGCGACCCGTCGCCAGAAGCGAGGCCTCGTTTTGTACCATCTGAATATTGggctaaatatttaatttctccGTTTTCCGATATCGGAAAGCGGTGAACGCCTTGTGGGGCGCTGTAGTTTCCACTACAGGGGAGGATAACGCAGGTTTACGGGGTGAAGGCCCCGCTCTTTGAGCGCCAGTCCTTTCTTAATTACTGAATCTTCTTTACTGAGACATCTGGATTgtgtctctgtttttcttttctcgGAGTTTGTTGTCAAGATGTCGCCGTAATGGAGTATCCGCGTCTGACAGAAATGAACCAGGGCCTTGGTCGCCTGACCAGCATTTGCATCGACCCGTTTTCCTTGTGTTTCGCCCCGTTTAATGCTAGAGAGCTCGGCAGCTCTCTCAGCGGAGCCCGGCCTCAGCGCTTCACCCAGCCAAAGCTATTCAAACATGGAGAAAAACCCGAACGCAGCCCGGTCCAGTTCAACAGGCCCAACTTCTGCAGAGTCTAAAACTAAAACAGATACCAAGAATAATGGGGGCTCTAAGCGGTACAACCGTAAGCGTGAGCCCTCCTTCCCAAAGGCAGAAAGTTTTTCAGGCCCTCGCCGCACCCACCCACAGAAAGGCAAGAGTTTCGACAAGAGACCCCCCCAGAGAGGCGGTGGAGGTGGCAGACAGGGTGGGCTCATGGGCGgtgggagaagagaagagGTAGCAGAAACACACCGGGCCGAGTATAGCCCGGCTCAGTTTTCTGGACCCAAAAAGATCAGTCTCAACCACCTGCTCAATTTTACTTTTGAGCCACGTGGAGGCCATTTCGGCTCTGTAGGCGATGGTCATTCCTGCTGGGGACGCCGCAACAAATGGGGCCATAAGCACAAGCCCTTCAACAAGGAGCTTTTTCTGCAGGCCAACTGCCAGTTTGTGGTGATTGATGACCAGGACTACCAAGCTCACTTCACTGACCCAGATACTCTGGTCAGCTGGGACTCTGTCCAGCAAGTGCGTATCTACAGCCATGAGGTGCCGACGTGCCCGATCTGTCTGTATCCTCCTGTGGCAGCGCACATCACCCGCTGTGGCCACATTTACTGCTGGCCCTGCATGCTGCACTACCTGTCTCTCAGTGAGAAGAGCTGGTCCAAGTGCCCGATCTGCTATGAGGCTGTACACAGTGCTGACCTCAAGAGTGTTGTTGCTATGGAGACCCATCAGTATGTGCCTGGTGATGTCATCACTATGCGACTGATGCGTCGGGAGAAAGGTGTGCTGGTGGCTCTTCCAAGCTCCCAGTGGGTCAAAGTAGAGGAGCCTATCCGTATTGGAGATGTGCGTCTAAGTGCTTACTCTAAGCTGTTGTTGGCATCTCGGGAGCAAGTTCTGAGTTTGCTGACCGAGGAAAGAGGAGCACTACAGATGCAGCTTAGCCAGGAGAAGGATGACCCGCAGGCCTGCTTCATACAGAGTGCCCTGCTGCAGTTGCAGGAGCGAGAAGATGCACTGCTGCAGCGGAACAGTCAGAATGGAGGCAATGTTGAGGGTGCAGACATGAGTAAACTTTCCCTAACCGACTGTGTTGCTCCTGAGGTGGCTGTTAACACCTACGCCAGCTCCAAGCCCATTCTGCAGTATGCGTCTGCTTTTGACGATGAGGTTCAGGATGTCCCTGAGGACCTGCCTGAGGACCTGCCTGAGCCTGAGGAGGTGACTGAGCCAGACTCTGTGCTTGAAGAACCTGAAGAAAATCCTGGTCAGAGTGTGGCTGCATCCCTTCCAAATTCACAGCATGGCCCATTCTACTACTTCTACCAAGCGGAAGATGGGCAGCAGATGTTCCTGCACCCTGTTAATGTGCGCTGTCTGCTGAGGGAGTACGGCAGTCTGGAGAACAGCCCTCAGTCAATCACTGCTTCTGTAGTGGAGATTGAGGGGCATACAGTCAACGAGGATGTTCGTCGTCGGCACCGTTACCTGTCTCATCTGCCCCTGACCTGTGAGTTCAGCATCTGTGAGCTTAACCTGCAACCACCCATCCTCTCCAAAGAGACACTGGACAGCTTTTCAGATGATATAGAGAAAAGAAAGCGCCTGAGACAGAAGAAAGTAAGGGATGAGAAGAGGAGGGAGAGAAGGATTGAgatggaggagaacaggaaGCAGGGGAAATATCCAGAGGTACACATTGGACTGGAGAACCTTCAGCAGTTCCCTGCATTTGGCTCTCCTCCTCAAGACAGCCCTCCAATTCCACCACCTGAGCTTCTGTTTGGACCTCCATCTCCTCTCAGCAGCAGCCCTACCTCtgATGGAGTGATGTTTCCCAGTCTGCATGGGAACAGTCCCTGCCTCAGTGTGGGTAGTGTAGAGGAAGATTCTCACTGCATGTCCTTTGCCCAGATGCTGAGAGATGGAAAGGCTCGTGTGGATGCTGGGCCCAAACAAGCCCCAAAGAAAGATGTGTTCCTGGCTCCTCCGGTGGCTGACAGTGATGGGGAGAGTGATGGCTCTGACCGGGTGCCGGTGCCTAACTTTCAGAACTCCTTTAGTCAGGCATTCGAGGCGGCACTTCTGCAGCTGGACCACAAGCCACCTGCCCCAGCTGAGGCTCTAACCACCTCTGAGGAGAAaggagggaagaaaaagaagaaaaagcaaAAGCTTCTGTTTAGCACCTCTATGGTTCATACAAAGTAAACAAGATTACACTTTTTCTCCTCTCCATACCTCATACTTTTCCTTTCAGCTTTCCTTAGTCATTATTTTGCCTTTTCTCCTCATCCCTGTCCCTCTGTCCTTGATTTGTTCTCTACTGTGTTAGTTTAGCCATGAGTAGGCCCTGAATGGAGGTTCAGTGACTAGCCAAAGTTGTGGTTGAGCTGAGTGATCTAACAACTGCAGTGTGATACATGCTATAGACCCAGTATTACTAATATAGCTTAGTTGTCGCTGTGGGCTATTTTAAGAGATCACTctgatattttttgtaaattcaCCACGCTGCttaatacacatttttaaatgttaacttGCAGCTTCACTTTTGTTGCATTCATTGATTATTGTAGCACTGCCCCAAGCTAACTTGAGTAGATTTAACCTCCGATTGTGGCCATCATTATGCAACTGTTAAACATGTCTACGGTGTTGAGGGCAATACTGGATGTGGGGTACAGAGGGGCATAAAATGAAGCAGTCAGCCAGCTGCACAAATATTGATACCCTCTTTACCAATATATCTAAACCCCTTTCCGAGCACCAGCACCAGTATTCTGTTTCAGACCAGATGCAAGACAAATTTAAAAAGAGGCACATAGTTAGTCTGCTTTCTTTAATTTGCAACGTGAGCATGTCTATTAGACTGGAGCTTCTTTTCCCTTTGTTCCCCTTGTTTTCCTCCTCCTTTCTCCTTCCCTTCAAAATATGACTCACTGGTTTATTATGGCACTTTATATTCTCCACATATGCATCAGCTATAATCAGCAGAATGCAGTTTTATATTGCAGTAGATGTGCATATGATCTGACATTCTGAGACACATTTCACTTTCAGTCATTGCCTACCCAGAGCTGGTAAACAGTGATTGTGATGATTGAATGCCTGGTTGCTCAAGCTGACCAGGTTTAGATCCGGCACCCATCCACAGTGTTGCTAAAGTTTGAAGCTTCAGGGAGGTGCAGCCTCCCATATTTTCTATGAACCGAGTAAAGAAATGGCATGAAAAGATCTGGTTAAATGTTTATGAATTTTCTGGATTGTTTAGAGGgtggttctttttcttttcttattttttctttttcttttggatCTGCTTAGAGGGAACCTGTGTTAAACATGCATATTGACTCAGAATGAATAAAGGATTATTATGCACTGTC

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75187 lncRNA upstream 101106 31728742 ~ 31730248 (+) True G55770
TU75192 lncRNA upstream 107305 31722624 ~ 31724049 (+) True G55771
TU75146 lncRNA upstream 182849 31648237 ~ 31648505 (+) True G55751
TU75142 lncRNA upstream 231783 31595829 ~ 31599571 (+) True G55747
TU75133 lncRNA upstream 250312 31575364 ~ 31581042 (+) False G55741
TU75256 lncRNA downstream 68893 31911997 ~ 31916459 (+) False G55821
TU75257 lncRNA downstream 68893 31911997 ~ 31968143 (+) True G55821
TU75282 lncRNA downstream 90279 31933383 ~ 31934697 (+) True G55836
TU75283 lncRNA downstream 96273 31939377 ~ 31944389 (+) True G55837
TU75295 lncRNA downstream 137810 31980914 ~ 31984290 (+) True G55846
XM_007229336.3 mRNA upstream 734 31827417 ~ 31830620 (+) False pop5
XM_007229335.3 mRNA upstream 734 31827418 ~ 31830620 (+) True pop5
XM_007229330.3 mRNA upstream 103334 31695619 ~ 31728020 (+) False golga1
XM_007229340.3 mRNA downstream 14322 31857426 ~ 31863709 (+) True mak16
XM_007229341.3 mRNA downstream 24050 31867154 ~ 31869244 (+) True LOC103046271
XM_007229342.3 mRNA downstream 24050 31867154 ~ 31869244 (+) False LOC103046271
XM_007229372.3 mRNA downstream 62113 31905217 ~ 31909811 (+) True LOC103029092
XM_022670506.1 mRNA downstream 177242 32020346 ~ 32024618 (+) True nudt18
TU74844 other upstream 1206308 30621926 ~ 30625046 (+) True G55502
TU74882 other upstream 1281293 30528862 ~ 30550061 (+) True G55532
TU74460 other upstream 3076537 28754030 ~ 28754817 (+) True G55218
TU74355 other upstream 3182241 28646064 ~ 28649113 (+) False asphd2
TU75269 other downstream 77716 31920820 ~ 31924095 (+) True G55831
TU75290 other downstream 131577 31974681 ~ 31977419 (+) True G55844
TU75720 other downstream 1515110 33358214 ~ 33366012 (+) True G56160
TU75764 other downstream 1561470 33404574 ~ 33406650 (+) True G56193
TU75802 other downstream 1721724 33564828 ~ 33581368 (+) False izumo1

Expression Profile