RNA id: XM_007231485.3


Basic Information

Item Value
RNA id XM_007231485.3
length 2262
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC103022681
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 34631304 ~ 34639803 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGACTTCCCACCTGATACCAACAGCGGCGAGCGTGCGGGTCTCTGGCTCTTCTATCgcttttaattgtattaattttactctctgtgtGAAAATATATCGGGGGCTATGTTCAAACACTACAACAGTGCTTGACCGGCATGGGGAGCCTCGGTGACAAGGGGCAGAATGAGGCGCACTGTCAGTGGGCCCTGTGCTCCCATCCGTGCTGTTGGGAGGCTGAGCAGGGCATTGCTAAAGGCATTTATAGCGGAACTGTGAAGAAACCCACTGAACAATGCACTGCTGTCCATGAAAGTTTTCCGTCTCTGACCGTGGTCAATGCTTCAGAATGGACTGGCTTGAGGAGGCATTCTGAAGAaaagctgttttataaaacagtcAGTCCAGACAGCTCAGTATCTGAAGGATCTGTGCACAGTATTACCTGTCCTCCAGTACTTCCACAGAAAGTGTCCACACAGAGGTTTAAAAGTGCAGAATCAGCCTTCAGCTCAGTATATCCAGCAGCACAACCTACAGCTGCAAAAGGAGTAAAAttaaacaaaGCTCATATCAGCCCTGATCTAAATGGCTCAGACTCACCACTGGGAACGTCTTCTCTGGTTTTATGGGTCCCAAACCCACACTATACACCTCAGTGTcttaaaaaaagATCAAACCTTCCACAATGTGCAGTGAAGGAGTTAATCTGCCTTCCTGCTTGTCCAGTGCAGAATGCTTCTGAAGAGAAAAAAAAGCTCAAGAGTGTGAAGAAGATGGTGAGCTTTCAGCAAGCCTGTTCACCCCTAAATAAAGCCAGGCTGACATTTTCATGCCAGCCTGATTCAGCCTCAAACCAGAGCCGCAGCGGAGAAGGGCAAAGGTTTGACAACAGGGGGGCAAACACAGGACCCTCATCAGCAACCTTGGAGAACAGAGTGAATccaaaagaaggaaagaagagtCCATTGATTTTAAGGAATAGACCTGTGCTCCTCCACACCAAGCGAGAACGAGGGGGGAAGAGAGTGAGCATGGATGCCCTGAAATCTCCCTACAAATTGGACAGCGAGACAGGTGGAGAGAGTATAGAATGGGACCGGTTGAGGAGGCAGGCCTGCCTGTGGAAGAGGCATAATTCCCTTCAGCACAAAGACTGCAGTGTCTCAGGTGATCCTCCAGGGGGAGCCAGTGTACTTCTGGTAGACAGTGGTTTGTGTCCTGTTTCTTCAGTGAGATCACATCACAACCTCCAGAGCCCACTGTCTGTAGCTCCTGCTGCATGGCACTGTACAAAAGGCATTTGGCACTATCAGAAAAGCAGCCAGCCACCACTGTCTCACAGCAAGTACCTCCACAGCACAGCTTCAGAGGCTGAGGCACTCTCCACTGACTGCAGTAGCTCTACTGTCGCAGACCACAGAGCCTCTATACAGATGCCAGGCACAGATGaaaagagtgtgaaagagaaagGCATTAAAGGCATCATCACTCTGACTAACTCACTGCTCCACTGCCAGCAATCAAACCAGGAGCACCCCGACAATATGAGTAAGCGTTCAGTGGTCAAGGTTGATGACAACTTCCCAGAGAAGTTAAACCACAGTTCAAAAAGCAGCTTGACACTCGTCACTGGAGCAGAGGAACCCTGGAGTGAAAGCAGCTCCACTGAGAAAGGACCAGAACCCAAAGCCTACCAAGTGTGCACTCCCCCAcccagcctcagctcactgtaaaacacatagacacacacacacacacttttttttgattaaatcatgcagaatgaaaataaataagttaattaTCCCTTGTCTCTTTAGTCTACTTGTTAAATTGTATTTGTATAGCCATTTTATAGCCGCTTTGTAGGGCTTTACTGAGTCTATCGAAcatgtaagtactttttttattgaatgaatatTCAAagtttattctgtatatttatacCTGCTAAACGGAAACAGTAGGTGGCAATCTAGAACCTTTGTATGACTGATTAACATGATCACCAGCATGCAGATAAACTGGTGTAGTTCAGTCCAGTGGTTACAGTAAAACCTGTCGACCATTACTGCATTTAGTGCTGCAGATTTTCGCTCTGTCACTAATTTAACATAGAAGATGACAAACCAAATGTACAGTAAGGCTTTGTAACACTGATGTATTGTAATTGTGTAGCGTTGTAGGATCACAGTAGTATTTTACCACAGTTCTACAAATTATGATTGATTGTCTGaatgtacattattatttaaagttctCCGATTTCAACACAATGA

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75969 lncRNA downstream 210103 34408840 ~ 34421201 (-) True G56349
TU75950 lncRNA downstream 227786 34397594 ~ 34403518 (-) True G56336
TU75943 lncRNA downstream 251493 34377103 ~ 34379811 (-) True G56332
TU75945 lncRNA downstream 252888 34377103 ~ 34378416 (-) False G56332
TU75947 lncRNA downstream 265953 34346316 ~ 34365351 (-) True G56333
TU76219 lncRNA upstream 69443 34709246 ~ 34710923 (-) True G56507
TU76224 lncRNA upstream 234761 34874564 ~ 34876645 (-) True G56512
TU76233 lncRNA upstream 273443 34913246 ~ 34913968 (-) True G56519
TU76249 lncRNA upstream 331446 34971249 ~ 34991135 (-) True G56532
TU76265 lncRNA upstream 396132 35035935 ~ 35036274 (-) True G56548
XM_007231491.3 mRNA downstream 14183 34601412 ~ 34617121 (-) True LOC103024249
XM_007231492.3 mRNA downstream 44442 34578817 ~ 34586862 (-) True LOC103024553
XM_007231494.2 mRNA downstream 92248 34535296 ~ 34539056 (-) True LOC103025191
XM_022670525.1 mRNA downstream 163149 34440070 ~ 34468155 (-) False adgrd2
XM_007231490.3 mRNA upstream 26548 34666351 ~ 34675480 (-) True stambp
XM_022670531.1 mRNA upstream 37653 34677456 ~ 34686116 (-) True tgoln2
XM_007231484.3 mRNA upstream 67655 34707458 ~ 34751853 (-) True LOC103022374
XM_022670922.1 mRNA upstream 292883 34932686 ~ 34939352 (-) True LOC103027077
XM_007231475.3 mRNA upstream 346270 34986073 ~ 34989263 (-) True LOC103046374
trnaa-agc_13 other downstream 1270863 33360369 ~ 33360441 (-) True trnaa-agc_13
XR_002650076.1 other downstream 1453654 33149074 ~ 33177650 (-) False LOC103023237
TU75652 other downstream 1829151 32781276 ~ 32802153 (-) False LOC103021360
TU74381 other downstream 6030794 28598278 ~ 28600510 (-) False LOC103031600
TU74384 other downstream 6207349 28417733 ~ 28423955 (-) True LOC111192657
TU76301 other upstream 453748 35093551 ~ 35108393 (-) True LOC103038119
XR_002650079.1 other upstream 645619 35285422 ~ 35293421 (-) False acaa2
TU76360 other upstream 656543 35296346 ~ 35299589 (-) False c6h22orf39
TU76403 other upstream 781027 35420830 ~ 35422149 (-) False G56638
TU76749 other upstream 1126967 35766770 ~ 35767677 (-) True G56887

Expression Profile