RNA id: XM_007231492.3


Basic Information

Item Value
RNA id XM_007231492.3
length 1590
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC103024553
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 34578817 ~ 34586862 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCACTGAACTGCTATAAAACACCCTGCGCCCGGATCAGCGCTGCTGCTGTTCAGCCTGGATCAAAACAAATGTTACAGTTAATGGTTTAGCGATAAAACTCGGCTTATATACACTGATTTAAGGAGTTCTCGAGGAGAGCGGGCTTTCGCCATGTTGTTAAATGATGTGTATAGTTTATTAAACTGAACTAAAGCTCAGTTCAGCCCGCGGTTTTCTGTACACTGAGTCACAGCAGAGTTACTGTGAGTGGTTCCTGCGGTGGGCGTCGATACATTTCTGAggggaaagaaggaaagaaacaaagaaagaaagaagagttcTCTGGTGCTTCCACTTCAGACTAACGTCAGCTGAAAGAACCTGGTATTCAAAATTGCTCAACTTGAAGGTATGGTGAACAGCCAGGTCCCGGGAGGTGTGTGCCAGTCTCGGGCGTGTGCGGGCTGCGGAGGGCGAATCTCCGACCGCTTCCTGCTCTTTTCCATGGAGCGCTACTGGCACACACGCTGCCTGAAGTGCTCGTGCTGCCAGGCCCAGCTGGGCGAGATTGGCACCACCTGCTACAGCAAAGGGGGCATGATCCTCTGCAGAGCCGACTACATCAGgttgTTTGGGCATACAGGTGCATGCAGTGCATGTGGTCAGTCCATTCCTGCCAGTGAGATGGTGATGAGAGCACAAGGCAACGTCTACCACCTCAAGTGTTTCTCCTGTGCGACGTGCCGAAACCGCCTCGTCCCCGGCGACCGATTCCACTACATTAACGGAACCATCTTCTGTGAGCACGATCGGCCGGGGTCCGCCCTGCTCAGCTCCCACCTGCAGGGCAACCCTGTGCTGCCTGACcaaaaaGTTTGCTGAAAGCCTCTCCTGCTTTCCCTCCCACTATCCTCCTCCCTGTTTTCCTCCTGAGGATCTCCAGCCTTAGGAGCAGTCATCAACAAATCTCCTGTACATGATCTTCTACTGCTGCACTTCTGCTTTCAAAAGGTCAAAAGGTTTCTCCACTACAAAGAAGATCTTGCATCCTTTCTTACACTCTGAACAGACTGTTGGTTTGAGGAAGTGCAGAATTCCAGACCATATGCAAGACTGTCTGTGGCCAGGGTTAGGTCTAATGAACTCTGTGGGACTTCATATAGACTGTAAAGACTTCTTCTCTGAactttttctcaaacatatattttggCACTTACATGGAACCGACACCTCACCGGTCGCAGGATGTGCTCGTCTCCGCATCGATTTAAGGAACTTTTATAACAAGTATAACCGATGACATCATCTTCTTCTTAAAACCTATAGATGGTACTTCAGTGcttgtgctctctttttttatgctcatgattcttttattaaaactttCAGGGTGTGGTTTCCATACAAGGTATTTTCAGGTTAACGGGCTTTGGACATTGTTTTCGGGGTGCAgagttgtaaatacttttttttataatgatgcATTATGGTTAAGGTCCAATCATACGGTCGAAATGTGACGTTTATTTAAGACATAATTTCAATAAATGCTTAAACACCCAAAACTGTATCgcgaataaacaaaaaaaaacaacaaaaacaaaacaca

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75969 lncRNA downstream 157616 34408840 ~ 34421201 (-) True G56349
TU75950 lncRNA downstream 175299 34397594 ~ 34403518 (-) True G56336
TU75943 lncRNA downstream 199006 34377103 ~ 34379811 (-) True G56332
TU75945 lncRNA downstream 200401 34377103 ~ 34378416 (-) False G56332
TU75947 lncRNA downstream 213466 34346316 ~ 34365351 (-) True G56333
TU76219 lncRNA upstream 122384 34709246 ~ 34710923 (-) True G56507
TU76224 lncRNA upstream 287702 34874564 ~ 34876645 (-) True G56512
TU76233 lncRNA upstream 326384 34913246 ~ 34913968 (-) True G56519
TU76249 lncRNA upstream 384387 34971249 ~ 34991135 (-) True G56532
TU76265 lncRNA upstream 449073 35035935 ~ 35036274 (-) True G56548
XM_007231494.2 mRNA downstream 39761 34535296 ~ 34539056 (-) True LOC103025191
XM_022670525.1 mRNA downstream 110662 34440070 ~ 34468155 (-) False adgrd2
XM_022670524.1 mRNA downstream 110662 34440070 ~ 34468155 (-) True adgrd2
XM_007234217.2 mRNA downstream 1014110 33536304 ~ 33564707 (-) True npc1l1
XM_007237394.3 mRNA downstream 1088867 33485649 ~ 33489950 (-) True myl7
XM_007231491.3 mRNA upstream 14550 34601412 ~ 34617121 (-) True LOC103024249
XM_022670530.1 mRNA upstream 44442 34631304 ~ 34639803 (-) False LOC103022681
XM_007231485.3 mRNA upstream 44442 34631304 ~ 34639803 (-) True LOC103022681
XM_022670529.1 mRNA upstream 44442 34631304 ~ 34639432 (-) False LOC103022681
XM_007231490.3 mRNA upstream 79489 34666351 ~ 34675480 (-) True stambp
trnaa-agc_13 other downstream 1218376 33360369 ~ 33360441 (-) True trnaa-agc_13
XR_002650076.1 other downstream 1401167 33149074 ~ 33177650 (-) False LOC103023237
TU75652 other downstream 1776664 32781276 ~ 32802153 (-) False LOC103021360
TU74381 other downstream 5978307 28598278 ~ 28600510 (-) False LOC103031600
TU74384 other downstream 6154862 28417733 ~ 28423955 (-) True LOC111192657
TU76301 other upstream 506689 35093551 ~ 35108393 (-) True LOC103038119
XR_002650079.1 other upstream 698560 35285422 ~ 35293421 (-) False acaa2
TU76360 other upstream 709484 35296346 ~ 35299589 (-) False c6h22orf39
TU76403 other upstream 833968 35420830 ~ 35422149 (-) False G56638
TU76749 other upstream 1179908 35766770 ~ 35767677 (-) True G56887

Expression Profile