RNA id: XM_007231610.3


Basic Information

Item Value
RNA id XM_007231610.3
length 2403
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC103034161
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 8254568 ~ 8257952 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGATTTATCATCCTAACCCACCACTGACTCACAGCAGTTCGACCTGACAGCCATGGGCTCAATAAGTATATCTCTGTTGGGTGTCTTTGCACTTCTCACATTCTCTGATCTTCATCCAATCAGTCGTCCTAACAATGGACTTCGCAAGTGCCGCCAAAACAGCAGTGGTCCAGCACTGGAGGTCCTCCCAGGTGGAGGCTGGGACAACCTGCGTAATCTGGACATGGGGAGAGTGATGAACATAAGTTATTCCCAGTGCCAGACCACTGAGGACGGGGTTTATCTTATTCCAGATGAGGTCTTTGTCATTCCACAGAAGGTGAGCAAGGTGGAGATGAATTCGGAGATCATCAGTTCATGGCTTGAACAGAAAAGCTCCACCTCAAGCTCCATTAATGCAGATGTGTCCTTCTTCTCCGTGGTCAATGCCAAGTTCTCCACTGAGAACCAACGCATGAAAACCCATCAAGTCAAAGGCAATTCTGTTACAGCACGGGTGCAGGTGCGTAACCATCTGTACACTGTGAAGGCTTATCCTGACTTCACTTTGGATTCACGCTTTGCCCGTCAGGCAGAGGAAATCGCAGACGCCATTGAGAACAACCAAACTCGCCATGCAGAATACCTGTCAGAGAAAATGGTGCTAGATTATGGCACGCACGTCATCACGAGTGTTGACACTGGTGCCACTTTGGTGGAAGAGGACTATTTGAAATCATCTTATGTTTCTGATGCACAGTCCTCTCAGTCCTCTGTCTCAGCCTCAGCTGGTGCCAACTTTTTTGACAAAGTTAAATTTGATATTGGCACTAAGGATTCACAAGGAACATCAGAAACACGTAACTACCAGGGTAACATTACTTACTCTATAACACTGAGTCATGGTGGGGCATTGTTTTATCCTGGCATTACTCTTCAGAAATGGCAGGAGAGTACTCTAAATAATCTGGTAGCTATTGACCGTAGTGGACTACCACTCCACTATTTCCTCAATCCATCAGTGTTTCCAGACCTCCCACTTCCAACAGTGAATAAACTAGCTGTCTCAGTGAGTCAGGCCATAGAACGCTACTATAAAGTTAATACTCACCCTGGATGTGTAAAACCAGATTCAAAAAATTTCAACTTTCAAGCCAATGTAGATGACGCTTCCTGTGAAGGCCCAAACACCAATCTTAGCTTTGGGGGTGTTTACCAGCAGTGCACTCCCTTGAATTCATATGGAGATGCAATCTGCCAGGAGCTTGCTTCAAAAAACCCAGCCACTGGCTCCTATTCCTGCCAGCAACCATACATCGCTACTCTATTGCGCTCTGAAACGCAGGAAAGACCATATGACCAGTATGTGTGCCATAGGCATTGTTATGGTTGTGGATTTCTTTGGCTTGACACCTGTTGTgaaaacatttgtggaaatgtGTACCATGTTCGGAGGGCACAGATTAAAACTTACTGGTGCGCCACTAATGGGGCAACTCCAGAATTCTCTGGATACCTCTTTGGGGGTCTATTTGGCCCCTCCTTACAAAACCCTTTAACCAAATCCAGATCTTGTCCTCCAAATTTCTTTACACAGACATTTTTGTCCAGTGGCTTTAAGATCTGTCTAAGCAATGACTACGAGGCAGCAACCAGATTCTCTGTACCTTTCGGGGGATTTTTTAGCTGCCAGTCGACCAACCAACTTGCAGGGAGTCAATCTCGCTGCCCACCGCAGTTCAGTCAACACCTTGTTGCCATAAGTGATGGGTGCCAAATACTTTTTTGTGTTCAGTCAGGCATTTTCACTGGAGGAGAGTTACTCCCTATCCGTCTGCCACCTTTCACAAGACCTCCAGTTATCAGTATGATAGCCACAAACACTGTGGCTGTGATGACCGAAGGCGATCAGGCCTGGGTGAGAGTCAAAGATACAAAATTGTGGAAGGTGGCAAAGCCTGAGGACATCACCAAAATGTCCCAAATATTTGACCACTCAACTCAGGCAGCAGGGAAAAAAGCTGGCATTGCCTTTGGTGTTCTTGCTCTGATTGCTCTCTTGGTGGCTGTTGCAGTGGTGGTGGTGAAAAAGAAGAGGCGAGTTTCTGGACTTGGAAAAGGCCAAAGCTATGAGGAAATTGAAAGTACAGAAGAAATTGAGAGTATTAGTGTGGCGAGTCCAGCACAACACGAGTCTGAGGTTGAGAGTGAGGGCCAAACTCAACCTCTCTTAGCATAATCACTTTTGctctaaaattgttttttaattttgaacATGTAAGCATTAAAATTTGTTTTAGCAACAATCAAGGTCTAATTTGTTACAATTTTCTAATACTTTTTTCTAATCTTTTTAATAAGAgaatttttgttacattttttgctTTACTCTATTTTTCTACAATAAAAATTATACAGAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68308 lncRNA upstream 51149 8202437 ~ 8203419 (+) True G50565
TU68289 lncRNA upstream 152281 8102075 ~ 8102287 (+) True G50550
TU68263 lncRNA upstream 208515 8045701 ~ 8046053 (+) True G50535
TU68123 lncRNA upstream 311820 7939969 ~ 7942748 (+) False G50439
TU68124 lncRNA upstream 312041 7939601 ~ 7942527 (+) True G50439
TU68332 lncRNA downstream 44564 8302516 ~ 8302910 (+) True G50580
TU68418 lncRNA downstream 497693 8755645 ~ 8756009 (+) True G50656
TU68536 lncRNA downstream 687321 8945273 ~ 8946372 (+) True G50770
XR_002650140.1 lncRNA downstream 747040 9004992 ~ 9006646 (+) True LOC107197475
TU68595 lncRNA downstream 946064 9204016 ~ 9204217 (+) True G50818
XM_007231609.2 mRNA upstream 9844 8243882 ~ 8244724 (+) True LOC103033636
XM_007231603.3 mRNA upstream 77785 8109822 ~ 8176783 (+) False slc20a2
XM_007231613.2 mRNA downstream 1651 8259603 ~ 8262730 (+) True LOC103035131
XM_007231611.3 mRNA downstream 6212 8264164 ~ 8269334 (+) True LOC103034488
XM_022671109.1 mRNA downstream 718266 8976218 ~ 8995752 (+) True hsd17b4
XM_022670979.1 mRNA downstream 827086 9085038 ~ 9203129 (+) True sema6a
XM_007260785.2 mRNA downstream 1068748 9326700 ~ 9335342 (+) True cdo1
TU68311 other upstream 33406 8207342 ~ 8221162 (+) True G50568
trnae-cuc other upstream 1270307 6984190 ~ 6984261 (+) True trnae-cuc
TU67633 other upstream 1877863 6371520 ~ 6376705 (+) True G50063
TU67445 other upstream 2465835 5777052 ~ 5788733 (+) True LOC103023397
TU67370 other upstream 2627116 5619159 ~ 5627452 (+) True prok1
TU68306 other downstream 12296 8270248 ~ 8278756 (+) True G50563
TU68335 other downstream 84988 8342940 ~ 8344514 (+) True G50583
TU68705 other downstream 1385422 9643374 ~ 9782721 (+) True G50889
XR_002650141.1 other downstream 1865768 10123720 ~ 10130801 (+) False nfu1
TU69382 other downstream 3574729 11832681 ~ 11882021 (+) True G51423

Expression Profile