RNA id: XM_007231666.3


Basic Information

Item Value
RNA id XM_007231666.3
length 3430
RNA type mRNA
GC content 0.50
exon number 2
gene id dmrta2
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 3172009 ~ 3175759 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGAGAAAAGCGCGCAGGTGGACACAGTTGAAAAAACGCGACAGCCAATCAGATCGCCTCCTCGCGCTTTGGCCAATGACGGGCGCCACATTGTTGTCAAATTAGTGTAATGAAAGCGCAGGAGcaacaatagagagagagagagtgagggagggagtgtGTATCCACTGCAATCTCTCCTTGAGTTAGTTATAGTGTCTCACACTGAGGCCAAAGCTACACCTCTCTTACCTGCAGCTCGAGACTCGTcccaacttttttattttttattctctgtttttttctcgtCTGCAGTCGCGTTTTGATCCGTCTTCTTCTTTCAGCTCCAGGCGTCGATTAGGTAAGCGATGGACTGAAGCGCATGCAACAAGTTGAAGATTGATTACAGAGAAGGACTTTTAACGCGAATCTGATTGGATGCCCATGTAGTATTGTGTATTTACATCACTTCTCCGAACTTTATCCTACAGTCTAAGTCCATTTAGCTTCTTTAGTCAGCGCTCTTTTTAAAACCTCGCACAAGTGACCGCTCTATAAGGCCAGGTAGTCCTCATCATGGATCTTCGCCCGGAGATCCCTTCAGGCCAGGCTGGCTCGCAGGTCCACCCTTCAGCCGCCGCCGCTGCCGCAGCAGCAGCCGCCGCGGCCGCCTCCTCCATCCCCGTGTCAATGGCCAGTGGGCTACTTCGCGGGCCACCGCTGCTCCTACGCGCCGCTGAGAAGTACCCACGCACGCCCAAGTGCGCGCGCTGCCGCAACCATGGCGTCGTGTCGGCGCTCAAGGGCCACAAGCGCTACTGCCGCTGGAAAGACTGCATGTGCGCCAAGTGCACGCTCATCGCCGAGCGCCAGCGTGTCATGGCCGCACAGGTGGCACTGCGAAGACAGCAGGCCCAGGAGGAGAACGAAGCGCGtgagctgcagctgctgtaCGGCACTGCGGAGGGGCTCGCGCTCGCCGCCGCCAACGGCATCATTCCTCCGCGCCAAAGCTACGAGGTGCTCGGACCGGTGAGCAACGACAGCAGCACAGACAACATGCAGAAATTCGAGCTCTTTCCGAAGACTTCTCAACCGCCCTCTACAAAGCCCGCGCCCGGCTCCGCTGATTCCGACCCCCTGCCTGGCATGTCCTCCCCGGACGCGCGCCACGGCTCCGGTTCAGAGAACGGTGACGGTGAGTCCTTCATAAGCTCCCCAGCCGCCAAGGCCGCGAAGGACGGCGAGGACACGCCCCCCTCGGTCAGCCCGCTGGGCTCTGCCTCGGATTCGGGCGCATCCGACACGGACAAGGACGAGCCCTCCCCGGAGCCCTCGGCCGCCTCCGCGCGCCACATGAACGCCATCGACATCCTGACGCGCGTCTTCCCCACGCACAAGCGCAGCGTGCTCGAGCTCGTGCTGCAAGGCTGCGGGAAAGACGTGGTGCAGGCCATCGAGCAGATCCTCAACAACGGCGGCCACCACGCCAGAGCCTCCGAGGAGCCGTGGGTGCAGGAAAGAGCTCTGAGCGGCGCGCAGGCGAACCTGCTCTCCGcctcaaccaccaccaccacctcctccgCCGCCGGGGGTCCCAGGCCGCTGCTGGCCGGAGCCATGCAGCTCAGCAACCGCTCCGCCTTCTCTCCGCTGCAGCCCAACGGCGCCACGCACTTCGGCCCCGACGGGAGCGCTTACCCTCTCGGGGCACCGCTGGGCCTCAGCCCGCTGCGCCTCGCCTACTCAGCCCACAGCAGAGGCCTGGCCTTCATGAGCCCTTACTCCAGCACAGGCCTCATGCCCACACTGGGCTTCAGGCCGCCCATGGACTACGCCTTCACTGACTTAATCCGAGACAGGACTCTCTTACACAAGGAGCAGAGCTTCACGAATGGACTGTATGGGCCTCTGGTCAACAACACCCCAGAGAAACAGTGagggggtgtgggggggggtgctgCTCCAGGCTACAGAAATGATCTGTGGGGATAGGCCTGATCTGTAGACCATAAGATGGGGTTTATAGGCTGTAGACCTTATGGATAGTCTATGGAACAAGCATATTATGGGCAATAGAGCTGATCTGTAGACTGTAGTGTAAGGAACAGTTGATCTGTAGGCTATGGAACAGGCCTGTGGTCTATAAATCACATCTGTAGGCATGtactacaaaaaaagtaaaatgcatTGGCTTTTTACTTGATTATTttgtatagaaaaaaacaaataaaatctaattgaaCACAAGTAAGACGGTTTCAGATACTGTATTAATACAGCCTTATTTATCTGTGCGGACAGATTCACACATCATCAAGTAAATCCAATGCATTTTACAGTATAAGACATTACAACCAACAGAATGAATAACCTATCACATCTGTAGGCATGTACCAcaaaaaagcaaattaaaagGTTAAATGCATTGACTTTTACTTGATTAAAATGTagagaaataaacaaatcaaatatgattaaatacttgAATGAGAATTAGACAGTTTTGTTGCCTAgccttttctatttaatatGTGCGGACAGATTCACACATCAAGTAAATTCAATGCATTCACAGTATAAGACAAATCATCCAACAAAACGGATTTATAGGTTACAGATACAGAATAAGCCATCTACAAATCATGCCTACAGTCTAACGTGTCTGTAGATCTGTACCCCACAGATCAGGTCTGTAAACCAGTAAAGTTCCTGTAAAGTGTTCTCCCACGTGAAGTTTCCTGTACATAAATAAATTCTGCTTTAATCTCGCCGGAGAATAAAACACCAACACCGACAGACAGAGACTGACTCTACTCTTAAACATGGTTACCAGTTAAAGTTGTGATTTGCGCAAAGCTCCGCGCGCTGAGGAGACGAAGCTGTGTTTGCAGAGTAACCAGTATTTTCATGTAAATTGTGTATTTGAAATTCTTCACATGTTGGTCACAATCCTGTTAGAACATTTACAGAGCGGATTAAAGTCTCCGTGTTATAAGGGTGCAATTGATAGAACCATGTTCTCCatcgtttaaaaaaagaaacaagagactatactaacattattattattattattattattattatattattattattattattattattattattatattattattattataattattcgATCTTGATCACGTTGTCCTTTTAGCAGAGACTCTGTAAAAACGTGCCATGTTAAAGAACAAAGGccgagctgagctgagctgatgGTGAGGAAGATCTGGACTTCTGGACTTTGGGATTCTCTTTGTGCTGATGATGTTCcgatcaaatcaaatcaatttgTTACAAACCTACTCCATCTCACATGGGTCACACACTGGTGTAACACACATCTCTGTTCGTGGTGAATGACATCTCGCTTCACTGTTACTAGCTGTACATTTCTCTATGTGAATTTTGAtagaaataaatgttattttatactgaa

Function

GO:

id name namespace
GO:0021537 telencephalon development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19491 DMRT4_5, DMRTA; doublesex- and mab-3-related transcription factor 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66451 lncRNA upstream 21421 2657196 ~ 3150588 (+) True G49146
TU66516 lncRNA upstream 71922 3096363 ~ 3100087 (+) True G49185
TU66483 lncRNA upstream 195980 2955254 ~ 2976029 (+) True G49162
TU66485 lncRNA upstream 302488 2867462 ~ 2869521 (+) True G49164
TU66484 lncRNA upstream 331226 2840312 ~ 2840783 (+) True G49163
TU66736 lncRNA downstream 57915 3233674 ~ 3234451 (+) True G49351
TU66737 lncRNA downstream 57949 3233708 ~ 3234451 (+) False G49351
TU66738 lncRNA downstream 57949 3233708 ~ 3234408 (+) False G49351
TU66735 lncRNA downstream 58242 3234001 ~ 3234451 (+) False G49351
TU66739 lncRNA downstream 58242 3234001 ~ 3234408 (+) False G49351
XM_022671018.1 mRNA upstream 19959 2982895 ~ 3152050 (+) True faf1
XM_007231669.3 mRNA upstream 254578 2881685 ~ 2917431 (+) True rnf11
XM_022671017.1 mRNA upstream 295581 2828935 ~ 2876428 (+) True ttc39a
XM_022671008.1 mRNA upstream 362585 2747844 ~ 2809424 (+) False eps15
XM_022671025.1 mRNA downstream 343849 3519608 ~ 4194714 (+) True agbl4
XM_007235278.2 mRNA downstream 844694 4020453 ~ 4041702 (+) True bend5
XM_007235279.3 mRNA downstream 846156 4021915 ~ 4041702 (+) False bend5
XM_022671029.1 mRNA downstream 1024180 4199939 ~ 4230987 (+) True spata6
XM_022670972.1 mRNA downstream 1217942 4393701 ~ 4519665 (+) True bcar3
TU66507 other upstream 158379 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 158379 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 158379 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 2360744 808155 ~ 811265 (+) True G48714
TU66895 other downstream 1068769 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 2443400 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 2601293 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 3195761 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 3808431 6984190 ~ 6984261 (+) True trnae-cuc

Expression Profile