RNA id: XM_007231671.3


Basic Information

Item Value
RNA id XM_007231671.3
length 2762
RNA type mRNA
GC content 0.43
exon number 6
gene id tor3a
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2725485 ~ 2734540 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGATCGCTTTACTGCTCCTCTCCGCGCTGCTGGCGGATCCGGTTTCCGCGGATTTCTTCCAGTTTAACAGCCTCTCCAACGTCTCCACCTACTACTTCAACTACATCTACTGCCACGTCTGGGAGGGAGACTGCCAGCCCAACCAGGAGGATGCCAGCCAGCAAGtGCCGACCGGAGGCGTGTGGTCCTGGTTCTCTCAGGATTATACGGGCATGATGACGGCCTGGTACTGCAGCCTGGGGCAGTGCTGTGATTCAGGGGACTGCAGAATTACCAATAACCTCACAGCTCTGGAGAGAGACCTGCAGATGAAGCTTCACGGGCAGCACTTGGCTCAGTCTGTGGTTCTGAAAGCTGTTCAGGGCTTCATCAATAACCCAGAGTCCAACAAGCCTCTGACCCTCTCCTTCCACGGCTGGTCCGGCACAGGCAAGAACTACGTGGCCCGGATGGTGGCGGACAACCTGTACCGGGACGGGGTGAAGAGCGAGTGCGTGCGCCTGTTTATCGCCCCGTTTCACTTCCCGCACACTCGGCTGGTGGACATGTACAAGGGTCAGCTGAGAGAGGCTATTAGAGACATGGTGCTCCGCTGTCCACAGACTCTGTTTATCTTTGACGAGGCGGAGAAACTCCACCCAGGTCTTATAGATGCAATCAAGCCCTACATGGACCACTATGATAATGTGGATGGAGTCAGCTACAGGAGAGCCATATTCCTGTTCCTCAGTAATATTGGTGGTGCTGCTATTAATGAAGTAGCTCTGGACTTTTGGCACTCGGGACAGAACCGGGAGGATATCGGCATGGAGGATCTGGAACATCGACTGCGTTCAGAATCTATGGATGCTGAAGGAGGATTCGCTCAGAGTGAGCTCATGTCGGGTCACCTGATCGACTTCTTCGTGCCGTTTCTGCCGCTGGAGTATCGTCACGTGAAGCTGTGCGCTCGAGACGCGTACGCCGCTCGGGGGGTGGAGCCTGACGAGGCGACGCTGGACGAGGTGGCTAAAGCCATGCTGTACGTCCCTAAAGAGGAGAAGCTGTTCTCGGCTCAGGGGTGCAAATCCATCCCTCAACGGATCAACTTCTTCTTACCTTAACCGATTAACACAGAGCcactaaataactaactaactaactaactaaccaactctACAAGAACGCTTACTGAATACTTGAAGGATGAATTGAGGTCTGTTGAGGAACTGCGGTTTATGTATTAATTCAGGTACATATCAGAAAATGTGCAGAAACATGAAGATATTCCATCTACTGGAATAGAGACATGGAGACTGGTGCTCGTCTCCACTGAACACTACAGCACTGACTTTTATAACCGAATTCGGGATTTGTACGTAACCCATGATACGTACTTATACCTGTAACTTATAACTACTTGTACTTATGTGTAAATACTAGAGGTGTAACGGTACAGATAATTCACTTTTCGGTACATTTTCAGTGCGGTtggaggataaaaaaaaaagggtggtCATTCTGTACAGCCTCACcttttattaacttcataataacaatgaatctttattataaccatgtttagttttttgggATTTAACATTGTACCGGGCTTgagctcttttattatttaatgctgAAATAATGGTTCTCTCCTgctgtcatcatgagagacgccatcttttagatcttgttaaaacaatcaaacaaagaGCCTGATTGTGAcgcttttattaaaaacaaaagcaacagcattattttaaccaattaaactacaaatactttttcctaatgagagcaagtgagagagagtacgagcgcctaaccctgcgtttaCACTGGAAAGCAATAgacgaccattcatttcctatggcagggcagATTTCAGCACAGCGAGTTCGTAAAGAATGCATGTACCGTTACACCCTtagtaaatacatttatttccacCTGGAATTGCAATGTTTACAtcaatttttgttttgtaatgtgaatgtttgttttgtCAAGtatctgttcatttatttagttttacatgttgtttttaatgcagtaaagggaaacatttataaactttaAAGGACTGTAATATCATAACTTTTATGATTTAATAGTACGGAGTGGTCCTGCTGTCAcggcatcagcagctggagtctgagagagcacgaGACTCTGgctgtgctctctctcccctctaaTCACCACCATTGTGACGCTGGCTGGCACAGGCCTCTGTTGGATGATGTGGATTGTTCTGATTCTCCTTGTGTCAGGAGGTAATTGGTTAAGCTAAATTTGGATGAAAATTTtgttaaaataccataaaataaccTTTTAAAGTGCTTAAATGTCTCTTATGCGGgctaattcagatttttttcgaAAATGATAGAAGAACTAAAGAAATTCAGTATTGCTTTATTGCCTTTGCAGTTTTCACCCTGTGTCTTTATTCGTAAAatgtatagaaaaaaacatttgtcaaACTCTTTGCaccttttaacctttttattttttacttactttgcacttttttttaacatggtattgttttctttttgtatgaAATTGCATTGTAGTGTTTGCATCGTAATGGAACTTGAATACTGGATGAATTTGCCTGTTTTAAGGAAGAATCCTGTTAAATAATTGAAATTTTCATGGGCATGAGTGTTTGTAAAATAATCAGTTAATAATACTCTACTTAAGACATTTAAATTAACCTAAGTTATCAttcttttatgtatattttgaactttttaaacactttttaggTTTTAAA

Function

GO:

id name namespace
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K23000 TOR3A, ADIR; torsin-3A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650124.1 lncRNA upstream 1257 2708704 ~ 2724228 (+) True LOC103026017
XR_002650126.1 lncRNA upstream 1257 2708704 ~ 2724228 (+) False LOC103026017
XR_002650128.1 lncRNA upstream 1257 2708704 ~ 2724228 (+) False LOC103026017
XR_002650129.1 lncRNA upstream 1257 2708704 ~ 2724228 (+) False LOC103026017
XR_002650130.1 lncRNA upstream 1257 2708704 ~ 2724228 (+) False LOC103026017
TU66484 lncRNA downstream 105772 2840312 ~ 2840783 (+) True G49163
TU66485 lncRNA downstream 132922 2867462 ~ 2869521 (+) True G49164
TU66483 lncRNA downstream 220714 2955254 ~ 2976029 (+) True G49162
TU66516 lncRNA downstream 361823 3096363 ~ 3100087 (+) True G49185
TU66736 lncRNA downstream 499134 3233674 ~ 3234451 (+) True G49351
XM_022671015.1 mRNA upstream 32701 2674216 ~ 2692784 (+) True osbpl9
XM_022671016.1 mRNA upstream 64029 2616841 ~ 2661456 (+) True LOC107196890
XM_007231672.3 mRNA upstream 108813 2603333 ~ 2616672 (+) True LOC103025499
XM_007243571.2 mRNA upstream 122871 2599242 ~ 2602614 (+) True LOC103037045
XM_022671012.1 mRNA upstream 127849 2584548 ~ 2597636 (+) False LOC103035089
XM_007231670.3 mRNA downstream 1764 2736304 ~ 2744452 (+) True LOC103024869
XM_022671008.1 mRNA downstream 13304 2747844 ~ 2809424 (+) False eps15
XM_022671007.1 mRNA downstream 13304 2747844 ~ 2809424 (+) False eps15
XM_022671006.1 mRNA downstream 13305 2747845 ~ 2809424 (+) True eps15
XM_022671017.1 mRNA downstream 94395 2828935 ~ 2876428 (+) True ttc39a
TU65829 other upstream 1914220 808155 ~ 811265 (+) True G48714
TU66507 other downstream 248306 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 248384 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 248384 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1509988 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 2884619 5619159 ~ 5627452 (+) True prok1

Expression Profile