RNA id: XM_007231672.3


Basic Information

Item Value
RNA id XM_007231672.3
length 1966
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC103025499
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2603333 ~ 2616672 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gatggtttgtgatcatccatcttcctcttgattatattccagaggttttttaatttagtaaaatcaaaggcTGAAAAAAGCGGGAGAATTGAGACACTCAGTCCTGCACAgagctgtagttctgtagtcaGCAGATAGCTAGCCTAGCCATGTACAGCTATTCATCCAGaataaaattTAACAGCGTGTTCCGCTACATCAGCTCCAGGGCATCCAGAAAATACTTTCCTATAATAGATGGTACTTTGCAGCAAGAACACAGACGTGTGTTTGAAGTGAATCTACAAAACAGCCAGATATGCCACCAAAGGTACCAGGAACACTGGGATAAGGTTTTAAAGGGAGGTGGTCAAAATGCCGTAACCCGACATACGCAGGGAAACCAGAAGATTTTGGCTCGAGAAAGAATTCGCATGCTACTGGATGATGAAGATTATCTAGAGCTTTCTCCTTTTGCTGGGCTGGGTTTGCCCTATGGAGACATCCCGGGAGCTGCCTGTCTCACAGGTGTAGGTAAAATAAAGGGACTGTGGTGTTTGTTTGCCGCTAACGATGCCACAGTGAAAGGAGGCACATGTTTCCCTATTACAGCAAAGAAACAGATCCGGGCACAAGAAGTGGCCATGCAGAATCGGCTGCCCTGTGTGTACCTGGGGGATAGTGCTGGTGTATTTATACCTCTTCAGGCAGACATCTTCCCTGATAAGAACCAAGGTGGAAGCATGTTTTACAATGAAGCTATAATGGCAGCAATGAATATTCCACAGGTGTCACTGGTGTGTGGGTCATGCACAGCCGGTGGAGCTTATACACCAACCATGGCAGAGGAGACTGTTATAGTTGACAGGATAGGGGCCATCTTTTTAGGTGGTCCACCCTTGGTTAAAGCTGCTACAGGTGAAGAGGTATCTTCTGAAGTACTCGGAGGTGCCGCTCTGCACTCAGAGGTGAGTGGCGTTGTGGATCATTTCGTTTCTGTGGAGAGTGAGGGATTCGAGTGCGTCAGGAACATCATCTCCACTCTCAACTTCAGCCTTCCAGAGGAGAACCCCACTGAGGTGGAGGAGCCACTGTACAGTGCTGAAGACCTTTTAGGCCTTGCTCCGCTGGACTACAGTAACAGCCTGGATGTCAGACTGATTTTGAGCCGACTGATTGATGGGAGTCGTTTCCAGGAGTTTAAGGCACGCTATGGGACCACTCTCCTCACTGGTTTTGCCAGAATCGAAGGACATCAAGTCGGCATCGTAGCAAACAATGGGGAGCTCACATACGAAGCTTGTCTGAAAGGAAGTCATTTCATTCAGCTGTGTAACCAGAGAGACACTCCACTTATCTTCCTGCAGAACACAGCCCCAGAGCCTGCACCCACTCTCTCAAAAGCACAGGCAGAGTCAAACTCTAACAGACTCAAATCTCAGGGATCCATGATGTCTGCTGTGGCCTGTGCCTCAGTTCCTAAGATCACTGTGGTGATCGGGGGCTGCCATGGTGCAGACAGCTACGCCATGtgtggacgGGCTTTTGAGCCCAACTTTCTGTTTTTGTGGCCCAATGCCAGGGTCTCAATCTTGGCCCCAGGGCACGCTGGTGCTGTGCTGCATGATGAAGAAGAGGATGCCCAGGAGATAAATGAGATacttaAAGAAGAAAGCTCAGCTTTCTTTTCATCGGGAAGACTGTGGGATGATGGAGTGATTCCTCCCCAGGACACTAGAAAGATGCTGGGGAAATGCATCAGCATCATGAACCAGCAGAAGTATCGGCTGCAGCAGGAGAAACAACACATTCCACTTCGGTTTTAAATGTACAAGCCTTCATCCAgaaatgtgttattattttgaATCTAAAATGTAACCTCTTAAAATGAATGTGGATTACTGTTCTTGCTTAATTTCCTATACATTCACAAAGAACACATTCTGAagcatatgcaataataaaattacattttaattttgttgca

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66400 lncRNA upstream 123962 2432799 ~ 2479371 (+) True G49116
TU66401 lncRNA upstream 173690 2428120 ~ 2429643 (+) True G49117
TU66409 lncRNA upstream 175422 2426273 ~ 2427911 (+) True G49122
TU66406 lncRNA upstream 177165 2425130 ~ 2426168 (+) False G49122
TU66405 lncRNA upstream 198605 2404515 ~ 2404728 (+) True G49121
TU66451 lncRNA downstream 40524 2657196 ~ 3150588 (+) True G49146
TU66455 lncRNA downstream 54145 2670817 ~ 2672813 (+) True G49150
TU66456 lncRNA downstream 64526 2681198 ~ 2681503 (+) True G49151
TU66460 lncRNA downstream 90351 2707023 ~ 2708224 (+) True G49154
TU66461 lncRNA downstream 90351 2707023 ~ 2709154 (+) False G49154
XM_007243571.2 mRNA upstream 719 2599242 ~ 2602614 (+) True LOC103037045
XM_022671010.1 mRNA upstream 5697 2584545 ~ 2597636 (+) False LOC103035089
XM_022671016.1 mRNA downstream 169 2616841 ~ 2661456 (+) True LOC107196890
XM_022671015.1 mRNA downstream 57544 2674216 ~ 2692784 (+) True osbpl9
XM_007231671.3 mRNA downstream 108813 2725485 ~ 2734540 (+) True tor3a
XM_007231670.3 mRNA downstream 119632 2736304 ~ 2744452 (+) True LOC103024869
XM_022671008.1 mRNA downstream 131172 2747844 ~ 2809424 (+) False eps15
TU65829 other upstream 1792068 808155 ~ 811265 (+) True G48714
TU66507 other downstream 366174 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 366252 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 366252 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1627856 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3002487 5619159 ~ 5627452 (+) True prok1

Expression Profile