RNA id: XM_015600863.2


Basic Information

Item Value
RNA id XM_015600863.2
length 5389
RNA type mRNA
GC content 0.55
exon number 27
gene id LOC103026437
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2527469 ~ 2583319 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtatacacactcactcactcactcactaagccagtagtgtgtgtgtatgtgtgtatgttgaTACTGATTGTTCCAGTGAGTGGAGCTACTACCACCTCTACCGAAGGCTTTGACCCAGGCACACCGGACCCTGACCACTCTCTCTGCCGCCTCCGCGTTCACTTTCCTCGGGGAGGTCCAGGATGAGCCTACCGCGGCCGGACGAGTTCCAGCCGCCCCCGGAGTGCCCGGTCTTCGAGCCTAGCTGGGAGGAATTCGCGGACCCGTTCGCCTTTATCAACAAGATCCGACCAATCGCGGAGAAAACGGGAATCTGCAAAGTCCGACCTCCACCGgACTGGCAGCCTCCGTTCGCGTGTGATGTTGACCGACTCCATTTCACTCCTCGGATCCAGAGGCTGAATGAATTGGAGGCGCAGACTCGGGTTAAGCTTAATTTTCTCGACCAGATCGCAAAGTTCTGGGAGCTTCAGGGATGCACACTAAAAATTCCACATGTAGAGCGGAAGATACTAGACCTTTACCAGCTGAACAAGctgGTTGCGGATGAGGGGGGGTTTGAGCTGGTCTGTAAGGAACGCAGATGGACGAAGATAGCTATGACGATGGGTTTTGCCCCTGGTAAAGCAGTTGGTTCACACCTGCGCTCACATTATGAACGGGTCCTCTACCCTTACAACCTCTTCCAGTCTGGAGCCAACCTGCTGTTTATCCAGAACCACTCCCTGCCCGAAAGTGATGAGAAAGAATACAAACCTCATGATCTGGTGCAGAGGCAGAACACACAGGTGCCTCCCGATGCCAGCACACCTTCCCGACGAGCCAAACGGATGAAAGCTGAGtcTGGATGTGGGAAGTCTGAAGCATGTGCTGCAGGAGGAGaggtgtgtgaaaacaaacccaaCCTGAGGAGGAGGATGGGCTCATTCGTAGCCAAatctgaaccagTGAAGGAAATCCCCATTCAGATTAAACAGGAGCCGGTGGAGAGTAAAGTTGTGCAGCCGGAACCGGAGAAGACCAAACCTCGCCAAAAGAAAAACACCCCCCCTCCACCCGTCAGCGTTGTGGATCTGTACGTGTGTTTAGTATGCGGGAACGGCAACGATGAGGATAGGCTGTTGCTATGCGACGGCTGTGATGACAGCTACCACACCTTCTGCTTGATCCCGCCCCTAACCGACATCCCTAAGGGTGATTGGAGATGCCCCAAGTGTCTGGCTCAGGAATGCAGTAAGCCGCAGGAGGCGTTCGGCTTCGAGCAGGCGCGCAGAGACTACTCGCTCAAAGCCTTCGGGGAGATGGCCGACTCTTTCAAGTCTGACTACTTCAACATGCCTGTCCACATGGTTCCCACAGAGCTGGTGGAGAAGGAGTTCTGGCGGCTGGTGCGCACTATAGAGGAGGATGTGACGGTGGAGTATGGAGCTGATATCGCCTCCAAGGAGTTCGGAAGCGGATTTCCCATCAGGGGCGGCAGGTTCAAGGTCGCGCCGCATGACGAGAAATACCTGAGCTGCGGCTGGAACCTGAATAACATGGCCATGATGGACCCGTCGGTGTTGACCCATGTGACAGCTGATATCTGTGGTATGACCCTGCCCTGGCTCTACGTGGGCATGTGCTTCTCCTCTTTCTGTTGGCACATCGAGGACCACTGGAGCTACTCCATCAACTACCTGCACTGgggaGAACCAAAGACGTGGTATGGAGCTCCTGGTTTTGCTGCAGAGCAGCTGGAGGCGGTGATGAAGAAACTCGCTCCTGAGCTGTTCGAGTCACAGCCGGATCTGTTACACCAACTCGTCACCATCATGAACCCAAACACACTCATGTCCTACGGAGTACCAaTTTACCGGACCAATCAGTGCGCAGGAGAGTTCGTCATCACGTTCCCACGAGCCTATCACAGCGGCTTCAACCAGGGCTTTAACTTTGCCGAGGCGGTGAACTTCTGCACGGTGGACTGGatGCCTCTGGGTCGTCAGTGTGTGGATCACTATCGCCTGCTGCACCGTTACTGCGTCTTCTCCCACGATGAGATGATCTGCAACATGGCTGCTAAAGCCAATAAGCTGGACGTGGTGCTGGCCTCCTCCGTTCACAAAGACATGGTGCTGATGATCAACGAGGAGAGAGACCTGCGGGACCAAATCCGCAAGCTGGGGGTGgtgcagtgtgagctgtttGAATACGACTTGCTGCAGGACGACGAGAGGCAGTGTGTGAAGTGCCGCACCACCTGTTACCTGTCTGCCCTCACCTGTCCCTGTCGACCGGGTGAACAGGTGTGTCTGCACCACGCTCGCCACCTGTGCTCCTGCCCCATCTCCAACTACACGCTGAAgtaccGCTTCACGCTGGATGATCTTTACCCCATGATGAATGCTGTGAAGCAGAGGGCCGAGTCCTATGATGTTTGGGCCTCACATGTCTCTGAGGTTCTGGAGGCCAAACTGGATAAGAAGCGCAACCTCACAGTGTTCCGTTCTCTGATTGAAGAGTCAGATAAAGGGAGTTTTCCTGATAACGATCTGTTACGCCACCTGAAACTGGTCACACAGGATGCAGAGAGGTGTTCATCTGTGGCTCAGCAGCTTCTAACCGGCAAGAGACAGACCAGGTACCGCATTGCTGGAGGAAAGACTCAGAATCAGCTGAGCGTGGAGGAAATGAGGTCTTTTGTCCGGCAGCTTTACAACCTTCCCTGCAGCCTAACACAGGCACCGTTACTGAAGGAGCTGCTGAACCGTATTGAGGACTTCCAGCAGCACAGTGAGAAGGTCCTGTCTGACGACGTCAGTCCGGATCTGGTGGGGGAGATTCAGGCTCTGCTGGACGAGAGTTCGGAGTTTGACGTTAGTCTGCCGGAGGTTTCTCAGCTGCGGGAGCGTCTGGAGCTGGCCCACTGGCTCGGCGCCGTTCAGCGGGCTGAAGATTCCTCCAGCAGTCCTCGCGGCCTCTCGCTGGACGGCATGCGGCGGCTTATCGACCGCGGGGTGGGGCTGACCCCCCACCCGTCCACGGAGCGAGCCATGGCCCGGCTACAGGAGCTGCTCACGCTGTCGGAGCAGTGGGAGGAGAGAGCGCAGACTCTGCTGAAGACCAGGCCTCCGGAGAGCCTGACGTCTCTCTCTGGCACTCTGAAGGAAGTGGACTCTGTTCCTACATACCTGCCCAACTGTCTGCTGCTGCGGGACTCCGTTCAGAGAGCCACCGAGTGGCTGAAAGAGGCCGAGGCTTTACAGGTGGGAGGTCGTGTTCCTGTTTTAGACACTCTATCAGACATGGTGCTGAGGGGCCGGGCGATTCCTGTGCAGCTGGAGCCGCtggagaggctggaggcgctggTGTCTGAGGTCCAGACCTGGCGGGAATCGGCAGCTAAAACCTTCCTGATGAAAAGCTCCTCCTACACTTTGCTGGAGGTGTTGTGTCCCCGGTGTGAGGTGGGGAATTCAGTGAAGAGAAAGGTGAAGAAGACGAAGGGTGATGTGATGCCGTGTGGGAAGAAGAGAAGCGGGCGATTGGACAGTCTCAGCGATGTAGAGAAAGCTCTTTCAGACAGTAAAGACTCCGCCTCCGCTatggcGACTCTTGCTGAGGTGCGAGTGAAAGAGCTGGAGTCTCTGGCGTCTCTCCGTGCAGCTAACGAATCGAAGCTCCTCCCCTCGGCCGACAGCGGTGCTCTCAGGGTCTGCGTGTGTCAGAAGGCTCCTATGGGTGCCATGCATCAGTGTGAGCTGTGCCGGGAGACGTTCCACACCGTGTGTACCGGGGGGCCGGCGGACCCCCGCAGCGCTAAGCCGTGGTTATGTCCGTCGTGTCACAGATCGTCTAAACCTCCGCTGGAGAAGATCCTGCCGCTGCTGGCGTCTCTGCAGAGGATCCGGGTGCGCCTGCCCGAGGGAGACGCGCTGCGCTACATGATCGAGCGCACGGTCAGCTGGCAGCGGCGGGCGCGGGAGGTCATGGCGTCGTACGAACTCTCGCCACAGTCTCAGAAACACAAGGGCAGCTCGCCGTCACCGGGGCAGTCAGGAGCAGACAGCAGTGGAACGTCTCAGGATTGGAGCAGGTGCAGTCAGGAGCAGTCTGTCTTCTACATCGAGCAGCGCTGCATCCCACTGCAGGGTCTGAGTGCAGATTTAGAGGAGCTGATGGTGGACGGATTATTGCTGCAGGTTTCATTACCTGAGACTGAGCAGCTTTACACACTGCTACTGAACGGCCCTCCGGTCCAGCGCagcccccaacacacacactcagcccaGCACAGCCCTCAACACACACCCTACCAATCTCAGGAACTCGCCTCACCACACCGGGAGAGAGACAGCGTTACCTCAGCGGAGAAGAAAGCAAAGCGgcggatagagagagaggagctgagTGGGCTGGAGGTTCCGGTGAGGGAGCGAGGGATCACGAAGAGGAAGAAGCAGAGAATGAgcaaagagaagaggagagagaggaaagcaGCGTCCGTCTCGGCGTCTCCAAACTACCTGTCTGACCTGTCCCCGTCAGACGACTCGGAGGAGGACATGATCCTCTGCCCGGCGGAGAGCTGCCGGCAGCCGGCGGGGGACGAGGCGTTTCTGCAAAGATGGCAGCCGAGGAGGACTACGTGTGCGTCTCCTGCAGCTCGAGGGACCTGGGCCAGCGGCGGAAATAAAGAAGGAGCAGAGAGAGGAGGCGAGAGAGGAGGCTGGGAGAGCGCGGAGGACTTGGAGGACTAGGGGAAGGACCGGTCCATCTCTTCCTTCATCCCTCATCCCTCGTTTTCCtcctttcttcttttcctcAGCCCTTCCCTGTGAACTGCCCTGTTCCCGGTTCTGTAACTGACCACCCCTCAGCTCCCTGTGACCTATGACCTCTTATTTTTGATCTTTGTAACGACGGTGCTATTTcctctattttatttttgttctgtttgttttttttaaatctgttgttCTGGATGATGCTACTTGgtcacttttttgtatttttacagcttttttccTCCTATTTGAATTTGAACTGTGTGGTTGTCTTTCTTTAAAGtctttaaaggaaaaaaaagaggctAAATGACTTAATGCTAAATGAAGAGTTACAGTGGGAATATTCCGTGGGTTTCCGTTTGTGTGCTGCTCCGTTGCAATTTGGGAGTCGGCAAGTCGGCTAAACCGTTCAGAGCACGTTGTGGAGaggaaaaacagacaaacaaacaaaaaaaaaaacaggaacatttttctcttttccagAGATTTCTGCATGCTGAACCAGAGACACAACTACACAGGACACTCGGCAACaatcatttttcaccaaaaatctacagtaaataaataagagagaaagagaaacctatttttttggattgaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66400 lncRNA upstream 48099 2432799 ~ 2479371 (+) True G49116
TU66401 lncRNA upstream 97827 2428120 ~ 2429643 (+) True G49117
TU66409 lncRNA upstream 99559 2426273 ~ 2427911 (+) True G49122
TU66406 lncRNA upstream 101302 2425130 ~ 2426168 (+) False G49122
TU66405 lncRNA upstream 122742 2404515 ~ 2404728 (+) True G49121
TU66451 lncRNA downstream 73877 2657196 ~ 3150588 (+) True G49146
TU66455 lncRNA downstream 87498 2670817 ~ 2672813 (+) True G49150
TU66456 lncRNA downstream 97879 2681198 ~ 2681503 (+) True G49151
TU66460 lncRNA downstream 123704 2707023 ~ 2708224 (+) True G49154
TU66461 lncRNA downstream 123704 2707023 ~ 2709154 (+) False G49154
XM_015600865.2 mRNA upstream 6051 2510144 ~ 2521419 (+) True LOC103031418
XM_015600866.2 mRNA upstream 6051 2510144 ~ 2521419 (+) False LOC103031418
XM_022671014.1 mRNA upstream 21274 2478591 ~ 2506196 (+) True klhl12
XM_007231678.3 mRNA upstream 52897 2465593 ~ 2474573 (+) True adipor1
XM_007231679.3 mRNA upstream 165246 2359922 ~ 2362224 (+) True LOC103028158
XM_022671010.1 mRNA downstream 1226 2584545 ~ 2597636 (+) False LOC103035089
XM_022671009.1 mRNA downstream 1228 2584547 ~ 2597636 (+) True LOC103035089
XM_022671013.1 mRNA downstream 1228 2584547 ~ 2597636 (+) False LOC103035089
XM_022671011.1 mRNA downstream 1228 2584547 ~ 2597259 (+) False LOC103035089
XM_022671012.1 mRNA downstream 1229 2584548 ~ 2597636 (+) False LOC103035089
TU65829 other upstream 1716205 808155 ~ 811265 (+) True G48714
TU66507 other downstream 399527 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 399605 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 399605 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1661209 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3035840 5619159 ~ 5627452 (+) True prok1

Expression Profile