RNA id: XM_007231679.3


Basic Information

Item Value
RNA id XM_007231679.3
length 2303
RNA type mRNA
GC content 0.50
exon number 1
gene id LOC103028158
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2359922 ~ 2362224 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGAGAAGTTAGAAACATGGGAACTGACAGCAGCGCATTCCTTcgctcatacacactcactcaaacacactcaaacacacccacccaccGCTTTCAAAGCGTCGCTGACTGACGTTTCACGCACAGGTATTTatttacaggtgtgtgtgtaagtaaggTGGGCTACTGCACGCGCTGGTGACTTGAGATCCTCCTGCACGGCAGCACGCGAGGGCAGCAAGCCCCTCTACTTTCTCCGGCTCCTGGGTGTCTGAGCTCCATGGAAGTGGCCGGTATCTACGAACGGGACTGCTTCGCTTACCACGGCAGCAACTACGACGCCGACGCGTACCGACACCTGGCAGACGGCTCCATGACGAAGCTGGGAATCGCGGAGCACGAGAAGGCGATTGACATCAGCATCTACGTGGACACCCCTTTCAtgcaccatcaccatcaccagcaGCACCAACACCACCATCACCTGCACCAGCCGCCGCTGAGCCACGACCTGCTCTTCCCGGACTACGCGCACGAGGACGCCAAGGCGGTGGCGGTACCGGACAGTCGCGAGCTCGAGCGTGGTGGGGACCACGAGCACGCCGCGCGCCGCCTCGACTACGCCGAGCTGCACGAGACGCGGCTGGACGCCGTGCTGGGCGCGGACTTCTTGGGTCGCTGCTGGCGGGGAGGTGGCGGTGGAGGTGGAGGCGGCAGCGACGACGACGCCGCGCGCATGGACGGCAGCGGACCCTACCTGCGCACGACGTCGTTCCCCACGTCGGGAGGCGTCGGCATGAACGGTAGCCTTGGCGACGTGTCCGCCGCGTCCTCCTCGTGCTCAAGCCCACCGGGAACTCCCGCGCCACAGCCgctgtcatcatcatcatcgtcgtcGTCGACTCAGCTGAGCGGCGGCAAAGGCGGGAAGGCGGCGGGAGCGCCTCACGGTTCCAGCGGATCCAGCAAAGGCAAGAAGCGCCTGGACAAGGACAGCGACGAGTACCGGCAGCGGCGCGAGCGCAACAACCTGGCGGTGCGCAAAAGCCGCGATAAAGCCAAGATGCGCAACATGGAGACGCAGCACAAGGTGCTCGAGCTCGCCGCCGAGAACGACCGGCTGCAGAAGCGCGTGGAGCAGCTGTCGCGTGAGCTCGCCACGCTGCGCAACCTGCTCTCCGCCACGGGCCAGTGCTGACCCAGGCTGAGAGCGCGCGGGACTCTTTGAACTCGTTTGAGCTCGTTTGAACTGTTGTCTATGATCTATCGATCTGAACTGTTTTTGAAGAAATGAGAGATAAGAGCatttgattgttgattgttggtTGTTTTGCTCTCAGAAATGATCATAAAAAAGGCTACGAATTTATTGACACGATTAATATGATTATATCAAGagctagggatgcactgaaCTGCAGTTCATGAATGCTTCAGTATATATTAACATGTTTATTTGGCTTAGaagcacttaaaaaaattgactactcaaaaagtgttttgtgttggtgtgtcatctcatttttttattaacatctgggatgttaaaaacatgtttaaatcaaAATCCAAAGAAAAATAGTGATGGTACATTTAGGCTAGCTTGTccaattcattcattcattcattcattcattcattcattcattcatgcagTTAAAGAGACAAATATCCTATAAGAACAATAATGTTCAGAATAGCTCATTAATCTATTCAATTTATTCACTATTGGAATTGAACAAACTgcacaaatcaaacaaacaaattcttatatatattttttgttttgttttttgatacGTATTCGTGCTCGTGCTTAGTTTCGGTGCATCCCTAACCTAACGATCAGCCTGTGTTTACAAGCGCGAGTTTACAGCATGTGAAAGTGGAAGACTGCAGCGTGGACTGCTGGATTGCGCAACACCGACCGTCCTCGTGCTTGGggactcttcttcttttttatttcttttttttttttttaatgtcactttttggtgtcctgtttttttgtcGATGTGTGTctgtacagtatttttgtacgggtggaaaaaaatacaaaaatgtctaCTGTTTAATACtctgttatttaaaaattgcAATTTTAAATTGCAATTTTCTCCTgatctcttcttcttctttttgccCGTATCTGGGGCAGTGGCTGTCAGGGGAAGAGTTGTACTGCAGAGGTATGATGCAACTCATTGTAACAGTATTGGCAACGCGCTGAAGAAGAGTCTgctggagagaaagagggtaCACATGTTCTATTGcgattattataatataatattttattgcattaaaaGATTTTTACAACTTTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009617 response to bacterium biological_process
GO:0001878 response to yeast biological_process
GO:0044030 regulation of DNA methylation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10048 CEBPB; CCAAT/enhancer binding protein (C/EBP), beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66393 lncRNA upstream 17413 2340205 ~ 2342509 (+) True G49112
TU66388 lncRNA upstream 42237 2315391 ~ 2317685 (+) True G49109
TU66381 lncRNA upstream 44774 2268337 ~ 2315148 (+) True G49102
TU66371 lncRNA upstream 63563 2295667 ~ 2296359 (+) True G49096
TU66183 lncRNA upstream 160986 2198592 ~ 2198936 (+) True G48991
TU66397 lncRNA downstream 22202 2384426 ~ 2384635 (+) True G49114
TU66402 lncRNA downstream 28138 2390362 ~ 2390581 (+) True G49118
TU66403 lncRNA downstream 36258 2398482 ~ 2398829 (+) True G49119
TU66404 lncRNA downstream 40459 2402683 ~ 2402977 (+) True G49120
TU66405 lncRNA downstream 42291 2404515 ~ 2404728 (+) True G49121
XM_007231153.2 mRNA upstream 358752 1999574 ~ 2001170 (+) True LOC103045867
XM_022670945.1 mRNA upstream 573560 1772919 ~ 1786362 (+) True LOC103027674
XM_015603140.2 mRNA upstream 595847 1760812 ~ 1764075 (+) True pym1
XM_022670987.1 mRNA upstream 898224 1415274 ~ 1461698 (+) True LOC103041629
XM_022670982.1 mRNA upstream 1882626 354036 ~ 477296 (+) True ajap1
XM_007231678.3 mRNA downstream 103369 2465593 ~ 2474573 (+) True adipor1
XM_022671014.1 mRNA downstream 116367 2478591 ~ 2506196 (+) True klhl12
XM_015600865.2 mRNA downstream 147920 2510144 ~ 2521419 (+) True LOC103031418
XM_015600866.2 mRNA downstream 147920 2510144 ~ 2521419 (+) False LOC103031418
XM_015600864.2 mRNA downstream 165245 2527469 ~ 2583319 (+) False LOC103026437
TU65829 other upstream 1548657 808155 ~ 811265 (+) True G48714
TU66507 other downstream 620622 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 620700 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 620700 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1882304 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3256935 5619159 ~ 5627452 (+) True prok1

Expression Profile