RNA id: XM_022671122.1


Basic Information

Item Value
RNA id XM_022671122.1
length 3180
RNA type mRNA
GC content 0.54
exon number 22
gene id kansl3
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 10304421 ~ 10333429 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTGAACTTACGCAGCTGGTGCACGAGCCCTCCTGCGCTCTGAAAGATCCAGTCCGTGTTTTGCTGGGTGCCTCAGAGGCGCGGTGGTGCAAAACAAAAGAAGGCGGCCATGATCGAGCAGTGAGAACAGCGTCACGCTTCTGTTTCATTTCCTAAATAGTTTGCAGGTTTCCGAAGAACCAGAATGGATTAAAACAATGGCGTGAATGTGCACATATTTACCAGAGATTTCTGAGAAGATCCCATGTTTGTGCTGCATGCGCTCCATCAACCTGGGATCGGCAAGGCTCCCAAGAGGAGGTAGAGAACAATGTACCCCGGCAGTGGAGAGCGGGACTTCCAGACGTCGGCCCGTCGGATGGGAACATCGCTGTTGTTCCAGCTGTCGGTGCACGATAGAGAGCTGGATCTGGTCTACCTTGATCACAGCTATGCCAAGCCATGGAACGCTCACCCAGATGCCAGCAGTGCCCGGCCCACTCGTATGTTGTTTGTCACCCCACGGCGGCAGCCCGAATCCTCTCTGGACTTGGACTTGTGCATCGATGTGGAGACAGTCACCCCAACACCCATGCCTCTCTATGACAACCAGAAGGCACGTAGTGTTATGAACGAGTGTGAGCGGCATGTTCTGTTTGCACGAACTGTTGCTGATGGGCCTCCACCTCCAGATGACTGGGAAGAACATGTTAACAAGACTGGATGGACCATGGCTCAAAACAAgctgtttaataaagttttaaaggcTCTTCAGGCTGAGAGACTGGCTAGGCTGGCCAATGAATGTGCCGGTAATGAGCCTGTCTTACGCAGAATTGCTGTAGACAAATGTGCTCATAAGGTTCGACACGCACTGGCGAGTGTAAACTGGGACACCAAGCTGACCCAGTGGCTCCACAGCACCATGGTGGAGTCTCTCAGCCTGACTCTGCTGGCTGCCTACCTAGATGTTCTGCAGACACTTAAAAGCAAGGTTCCATCTCTAATTGACCGGATGCTTCAATCCTCCTCCTCTAAAACGGGCGCATCAGGGTCTGAGGCTCTTTCCCTGCTGCTGAAACGCCCGTGGGATCCAGCTGTGGGTGTGCTCTCCCAGAATAAGCCTAGTAAACTTCCTGGTTCTCCTCTGATCCTGATTTGCCCATCTGCACCGACTCTCCCTTCCGTCTCTACCTCTCGGCGAATGAGATTCTGGCAGTCGCAGCTCTCCTGCTTGGGGAAGGTCATCCCCATAAACACCCATGTAGGCAATGGATCTAACTTGGGCATCACTCAGTGTCTGGAGCACATGGTCGGCACGGTCCGAGGGAAGGTCATTGAGGTTCATAGTCACTTACCCCACAAACCCATCATCCTGGTGGGCTGGAATGTTGGTGCGCTGATCGCCTGCCACGTGTCCCTAATGGAATACGTGACTGCTGTTGTGTGTCTGGGCTTCCCTCTACAAACAGTCAGTGGACCCAGAGGGGACGTGGATGACCCGCTGTTGGACATGAAGACTCCTGTGCTGTTTGTGGTGGGGCAGAATGCTCTGCAGTGTGGCATGGAGAACATGGAGGAGTTCAGGGAGAAGATCCGAGCAGATAacagcatggtggtggttggAGGGGCTGATGACAATCTCAGGTCTGTGATCAGCTCATCTAAGATGAAGACTGAGGGTCTGACGCAGACCATGGTGGATCGATGTATTCAGGATGAGATAGTGGACTTCTTGACGGGAATTCTGACACGAGTAGAAAACCCAGGTCACGCTACAGGAGAAACACGTGACCTCGAcacagagaagaagaagaaacccAGACGGGAGTTGCCTTTTGATGCAGAGAGATCACGACCATCCTCGCCTGCTATTCGTGTCCCCATCTCACCCTCAGGGTCTGAGGACATGTCCAGCGTGTGCAGTAGTCCCACAGCCAGTCCCAGTCCTAAGCCCAAGACGACTGGTTTGTCTCCAGCCCAGAAGTCCAGCCTCATTACTGCTACCCAGCTGCTCAAGACCCACATGCAGCGCTCTGGAACtgtgctcacacacaaacaagctCAAGCTCAGTTCGCTGCGTTTATGAAACAGAACATGCTGGTGAGGAAGAGCATTCCTCCTGGCAGCCCATCCTGTCTGTTTGTTCCGGTGTCGGGCGAGCAAGCAGACAGTCTAGAGCGAGACGACCTGCGGCTCCACATGAAGAGAAGACAGACGCCCAGCCCCACACCCAGCAAATCCTCCAAACGGGCCAAGATCAAAGTCACTATAGTCTCCCACGGTGAAACAGCAGGGGCCACGGGCACCTCCACATGCCAAGAAGTGGGAGCATCTGGAAAGCCCCTCACAGTCACCATGGGCCAGACCGTTTCAGGGGCCAAAGAGCTTTCCGGGCTTTTGaccgctcagagGTCCAGTGCTCTGGCGGATGTGTCTGGAGGTCTAGGCTCTAGTGGAGGTTCCTACCACGGCCTGCAGGGCAGTGTTATCTCTGGCTCTTCCTCTCCAGTACAGGTCCAGGCCCCTGCTGCTGCACAAGCTTCCTCTGCCAGTAGCCTGTTACAGGGTCTGAGCTTCAGTCTGCAggaaatcaacaccaaatcccCAGGTCTGCCCTCCAGCACTCAGgCTCCAGGAGGGAAGTTGCAGCCTCATGGACAAGTGCTGACCTCTCTCAGTCCAGCAGGGGGCACTCTAGTGCGCGCGGTCCCTGTCGTGTCCACCGGCTCCGGAATGACCAAAACCACGGCTATCCACCAACTCCTCACCAACGGTGGCCTGGCTAAGCTGGCCAACAGCCTTCCTGGACTGGCTCACGTGTCCAATCAGAGTGCTGGACTGAAAGCCCCCACAACCATCACAGTGACCCTGAGAGGACAACCAAGCCGAGTTCCAgctcttagccatgcaggagccaTACTGCCCCCACACACTGCACCTGAAAACCAGTGACCAGAAACTCCATGGAAGCTCCATCCGTCCATGCTGTTTGAAGCTACATTGGCTGCCACTTTGACCCCTATTACCTGCTAAGGCTCTGGTAAACCGGCTGTGTGGTTTCCTCACTTGAGCACGGAAGTCACATATATCTTCAGTTCTAAAACTTCTGACCCTGTGGTTGACTGACTAACCTGCTTACCCATCTCAGCACCTTGCAGGAACCTAAGCCCgagctgaaataaaattatggaCCTTG

Function

GO:

id name namespace
GO:0043981 histone H4-K5 acetylation biological_process
GO:0043982 histone H4-K8 acetylation biological_process
GO:0043984 histone H4-K16 acetylation biological_process
GO:0000123 histone acetyltransferase complex cellular_component
GO:0046972 histone acetyltransferase activity (H4-K16 specific) molecular_function
GO:0043995 histone acetyltransferase activity (H4-K5 specific) molecular_function
GO:0043996 histone acetyltransferase activity (H4-K8 specific) molecular_function

KEGG:

id description
K16719 KANSL3, RCD1; regulatory NSL complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68909 lncRNA upstream 19206 10267361 ~ 10285215 (+) False G51060
TU68910 lncRNA upstream 19206 10282491 ~ 10285215 (+) True G51060
TU68908 lncRNA upstream 37559 10266656 ~ 10266862 (+) True G51059
XR_002650142.1 lncRNA upstream 116367 10171949 ~ 10188054 (+) True LOC111192765
TU68897 lncRNA upstream 118140 10184552 ~ 10186281 (+) True G51051
TU68933 lncRNA downstream 89619 10423048 ~ 10428757 (+) True G51077
TU68952 lncRNA downstream 251044 10584473 ~ 10585274 (+) True G51096
TU68901 lncRNA downstream 302230 10635659 ~ 10636918 (+) True G51052
TU68972 lncRNA downstream 354456 10687885 ~ 10757255 (+) False LOC103038184
TU69158 lncRNA downstream 601025 10934454 ~ 10992773 (+) True G51255
XM_007234760.3 mRNA upstream 136901 10131853 ~ 10167520 (+) True LOC103023534
XM_007234755.3 mRNA upstream 173620 10123720 ~ 10130801 (+) True nfu1
XM_015601703.2 mRNA upstream 188425 10046002 ~ 10115996 (+) False LOC103021556
XM_007234765.3 mRNA downstream 17672 10351101 ~ 10418581 (+) True LOC103024888
XM_007235487.3 mRNA downstream 281933 10615362 ~ 10627483 (+) True LOC103037223
XM_022671126.1 mRNA downstream 313355 10646784 ~ 10712084 (+) True LOC103038909
XM_022671127.1 mRNA downstream 399473 10732902 ~ 10755749 (+) True LOC103038184
XM_007235224.3 mRNA downstream 727719 11061148 ~ 11075830 (+) True LOC103034408
XR_002650141.1 other upstream 173620 10123720 ~ 10130801 (+) False nfu1
TU68705 other upstream 521700 9643374 ~ 9782721 (+) True G50889
TU68335 other upstream 1959907 8342940 ~ 8344514 (+) True G50583
TU68306 other upstream 2025665 8270248 ~ 8278756 (+) True G50563
TU68311 other upstream 2083259 8207342 ~ 8221162 (+) True G50568
TU69382 other downstream 1499252 11832681 ~ 11882021 (+) True G51423
XR_002650027.1 other downstream 2103976 12437405 ~ 12448182 (+) False znf692
XR_002650026.1 other downstream 2103977 12437406 ~ 12448516 (+) True znf692
TU69789 other downstream 2982310 13315739 ~ 13327325 (+) False G51743
TU69793 other downstream 3023296 13356725 ~ 13368274 (+) True G51745

Expression Profile