RNA id: XM_007234791.3


Basic Information

Item Value
RNA id XM_007234791.3
length 1665
RNA type mRNA
GC content 0.54
exon number 3
gene id tmem47
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 14166669 ~ 14187067 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCCTGCAGGTGCCGGTTCAGATCATTGAGCTACAGGAGCGGCGCAGTCGCACGAGCTGCTCTCCATCCCTTTCTCACGCGCCTCCCcaaaacacgcacacacacacatagacacacacagacgGAGACGGAGACAAAACACCCCGCGCTCCAGAAGCTCGCGCTCCGCTCCTCCATGGCCTCGTCGTCCGCGAGCGGCGCGGAGGAGGCGCGCGCCCCCGCGCTGACGCCGCTGAAGCTCGTGGGTCTGGCCTGCGCGTTCCTCGCGCTGTGTCTGGACGCGGGCGCTCTGCTGAGCCCCGCGTGGGTGACCGCCGAGGGGCAGTACGCCCTGTCTCTGTGGGAGTCCTGTCTGAGAGCGAGCGGGCACGCGGACTGGCACTGCAGCAGCACGCTGGAGACAGATTGGCACATTGCCACGCTGGCACTGTTGCTGGGCGGAGCTTTCCTCATCTTCATCTCCTTCCTGGTGGCTCTGATCGCCGTCTGCACTGGAACCCGGAGACGATTCTACAGGCCCGTGTCCGTCATGCTGTTTGCTGCagTGGTTCTGCAGGCCTGCAGTCTGGTTCTGTACCCCATCAAGTTCATTGAAACCATCAATCTGCGAATGTACCACGAGTTCAACTGGGGCTACGGTCTGGCCTGGGGGTCCACCATCTTCTCCTTCGGAGGAGCCGTCCTTTACTGCCTGAACCCTAAAAACTACGAAGACTACTACTAAAACCTGCCTGAAGACTACATCCCCCACAATGCACTCCGCCGCCACACTGTTGACACTGCGCCGCATAAAGTTGCTGCGCCTCCCTGCGGAACTGATGATCACTGATCCTTACAAACTGAGCAGCGCAGCCAAGTGCAGCCGGGCCCGGCCGACTGGAACTGAACAATGGCTTCACCTGGATGCTCCCGAGCCACTCTGAATCTTTTTACGTTTTTCCCACGCCGACAACTGTCTGCATCTGGGTTGTCGACCGTTAATTAGCATCACCATTAGCATCGGCATTAACATTTAACGCATTATctttctccatcctctctcctctcccttATTATTAAAGTTTCACTCTCTCACCCTTTTTCCATCTGTCCGTCTCGTCTGTTCTCACCTTTTCCTCACTTTCCTCACTTTCTGACACCGCTGATCCATCCCTCATCTCCACCAGTTCTTCTTGCAAGCCACCGAAGCCAGGCTCCGGAACGATCTGGAATTCCTGGATCTAAGCTGTGATGCGCCGGCCCCTGTGGAGCACTCCATCTGGAGTGAGATTTGTAGCCAAGTAGGCAGGTGATGAgggttgtgtatgtgtgtaggtgtataagtgtgtgtgtatgtgcgtacaagtgtgtgtgcgtggatATGACCGGCCACACACAAACAGATCAAAGCAATTACTGCAATAATTAGAATATCAGTCAGTTTCGGTAATGAGAAAGCACAGATTTACACAAACAGAGTGGGAAGAGGTACGGTATGTTGAGGTTTTTACAGCTGgtagtagggctgcacgatattggaaatgttatttcaaatgttcgactatatatattgcgatattaattAACCAATGCAGGGCCTATGACGTCACCAGCCTGTCCCCGACCCGCATGCTGTCTCACGTCCAGACCGATCAAGAGTTGAGTCAGcgtggagcaaaaaaaaaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70327 lncRNA downstream 5718 14159776 ~ 14160951 (-) True G52127
TU70232 lncRNA downstream 66191 14099011 ~ 14100478 (-) True G52064
XR_002650034.1 lncRNA downstream 103484 14039674 ~ 14063185 (-) False LOC111192619
XR_002650035.1 lncRNA downstream 103484 14039674 ~ 14063185 (-) False LOC111192619
TU70196 lncRNA downstream 126388 14038340 ~ 14040281 (-) True LOC111192619
TU70333 lncRNA upstream 15099 14202166 ~ 14215562 (-) True G52132
TU70331 lncRNA upstream 18051 14205118 ~ 14215862 (-) True G52131
TU70330 lncRNA upstream 64370 14251437 ~ 14253428 (-) True G52130
TU70318 lncRNA upstream 119142 14306209 ~ 14312951 (-) True G52123
TU70319 lncRNA upstream 119142 14306209 ~ 14312951 (-) False G52123
XM_007234793.3 mRNA downstream 45340 14095333 ~ 14121329 (-) True nexn
XM_007234794.3 mRNA downstream 45341 14095333 ~ 14121328 (-) False nexn
XM_007234795.3 mRNA downstream 73804 14076764 ~ 14092865 (-) True mindy4
XM_022670248.1 mRNA downstream 135562 14015464 ~ 14031107 (-) True LOC103023638
XM_022670247.1 mRNA downstream 158912 14000804 ~ 14007757 (-) True LOC111192617
XM_022670257.1 mRNA upstream 24523 14211590 ~ 14221513 (-) True cpox
XM_007234786.3 mRNA upstream 68001 14255068 ~ 14276663 (-) True LOC103033235
XM_007234783.3 mRNA upstream 114076 14301143 ~ 14349004 (-) True sh3gl1
XM_007234784.3 mRNA upstream 114076 14301143 ~ 14349002 (-) False sh3gl1
XM_015601720.2 mRNA upstream 168091 14355158 ~ 14388059 (-) True LOC103032914
TU70092 other downstream 502555 13663401 ~ 13664114 (-) True G51960
TU70078 other downstream 575826 13565998 ~ 13590843 (-) True LOC111192615
TU69924 other downstream 842986 13285303 ~ 13323683 (-) True smim24
TU69280 other downstream 2962246 11204054 ~ 11204423 (-) True G51346
TU69071 other downstream 3850202 10313482 ~ 10316467 (-) True G51187
TU70366 other upstream 221869 14408936 ~ 14411611 (-) True G52161
TU70552 other upstream 889229 15076296 ~ 15084568 (-) True G52299
TU70793 other upstream 1995668 16182735 ~ 16185312 (-) True G52493
TU70803 other upstream 2039169 16226236 ~ 16227174 (-) True G52503
XR_002650036.1 other upstream 2219652 16406719 ~ 16427613 (-) False zcchc4

Expression Profile