RNA id: XM_007235647.3


Basic Information

Item Value
RNA id XM_007235647.3
length 1977
RNA type mRNA
GC content 0.57
exon number 2
gene id LOC103035166
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19902293 ~ 19906073 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCTGTACGGCGCGCTTCACACTGATTGGCAGCGCGCGAGGTGACAGCCGCGGCACGACCGTATTCAGGCCAATAGAAAAACGAAACTCTGAAGCCTTGTTTCTCCAGCCGCTTCGCTCGAGCCCAGCGTGCTGATGGAGGCCGGATATCAGCAACACAGCCAGAGCTGCTGAAGGCAAACGCACGCGCTTTTTGCAACGATTTATTCAActcttatctctctttatctcttgttctgtctctctctatctctctatccttTTCCAATGGTGTTCCGTTCCCCTTTGGAGCTTTACTCTACTCCCCTGCTCGTCCCGGGCTTTGCCGACGGCCCCGCGTTGCTGGCGGCCCGTGCGCGCTCCCCGGACGCGCGCGCTGCCGCCCTGCCGCCGCCGCCGGCGCTGCCTACGCTGAGCTTCACGGCCGAGCAGGTGGCGGGTGTGTGCGAGACCCTGGAGGAGACGGGCGACGTGGAGCGCCTGGGACGCTTCCTCTGGTCGCTGCCCGTGGCGCCACCGGGCGCTTGCGAGGCGCTGGACAAGCACGAGGCCATCCAGCGTGCGCGCGCCGTGGTCGCCTACCACACGGGCAGTTTCCGCGAGCTCTACCGCATCCTGGAGAGCCACCGCTTCACCAAGGAGTCGCACGGCAAACTACAGGCCATGTGGCTCGAGGCGCACTACCAGGAGGCCGAGAAGCTGCGCGGGAGGCCGCTCGGACCCGTCGACAAGTACCGCGTGCGCAAGAAGTTCCCGCTGCCGCGCACCATCTGGGACGGCGAGCAGAAAACCCACTGCTTTAAGGAGCGCACGCGCGGCCTGCTGCGGGAGTGGTACCTGCAGGACCCGTACCCCAACCCCAGCAAGAAGAGGGAGCTCGCACAGGCCACGGGGCTCACTCCCACGCAGGTGGGCAACTGGTTCAAGAACAGGAGGCAGAGGGACCGCGCGGCCGCAGCcaaaaacagGCTGCAGCACCACGGCCTGTCGCAGGGTGGTCTTCGGGGTCTCTCCGAGTCTAACCCGGGTCCGCCCGAGGCTGCGAGCCCAAGCGCGAGCGTGTCGAGCAGCGCGGAGCGCGCAGACGGCGCCACGGTGCTCTCCGTTACGGACAGTGACTCGGACTTCGATGTATGATGCAGAGCGCGCTCGTGGGGAAATAATGACAATGGACCtgtaaaacagacaaacaaacaaaaacagaaaaagggcCACGTGAGTGCAGCAGCTGCGCGCGTGTGCGCTCTTgctgctgtctctcgctcagaTGGAGGAAAAAGGCGCGCGCACTGGCTTTTCTGCCTTGCTTTTTTTCGCAGCGACATGCGTTTGGCTGCGAGGACGAGCGCgcgctctttcttttcctctctgtctctctttgatCTTGGgtcagtttttgtttttctgcatgTTCGTTTGTGAATAATTTTGGGACGATTTTTTTTGAAGAGGCACTAAAAGTGGAGTGGCGGAGCCTCGGGCTCTCCTCCGCTCCCTCCATCCCCCTGATTTAAAGCCGCAAAGCGGACACTTCTCCTCATTcccttcatccctccatccctcctctCTGTTCTGCAGACAATCGTGGAAGTCAAAAAGCACCTTTACTCCTCTTCTTTGACTCGACGGCAGATCAAAGTTCAAAGTTGGACTCTATCTCCAGATTTTCCAGATTTTCTATTGAATGCTCAGTGTCTGATGCGTTTTTACCCTCCCCTCCCCTACCCTAtcttacctttctctctctctctcttctctctctctctctctctctctctctctctctctctctgtcatccCTTAAACCCCcttcttccctccctccctttgtGTCCATAAGATGTCTAAATGTGTGTAAAGTGCTTTgagatttttaatgtttgttcattggttgtttttatactgtaaatggcGCTGACAGCGCGGTGTGATgggtcacttttatgcaaataaatataatttaatatgatAACTCTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19473 SIX3_6, OPTIX; homeobox protein SIX3/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71985 lncRNA downstream 24575 19877494 ~ 19877718 (-) True G53384
TU71981 lncRNA downstream 53228 19848820 ~ 19849065 (-) True G53380
TU71980 lncRNA downstream 67927 19833981 ~ 19834366 (-) True G53379
TU71976 lncRNA downstream 94279 19807743 ~ 19808014 (-) True G53376
TU71975 lncRNA downstream 95794 19806295 ~ 19806499 (-) True G53375
TU72094 lncRNA upstream 101874 20007947 ~ 20008162 (-) True G53462
TU72099 lncRNA upstream 126781 20032854 ~ 20033088 (-) True G53467
TU72089 lncRNA upstream 127290 20033363 ~ 20034632 (-) True G53457
TU72090 lncRNA upstream 128693 20034766 ~ 20035491 (-) True G53458
TU72087 lncRNA upstream 131046 20037119 ~ 20041892 (-) True G53456
XM_022670334.1 mRNA downstream 62711 19682391 ~ 19839582 (-) True LOC103034301
XM_022670333.1 mRNA downstream 231623 19605555 ~ 19670670 (-) True LOC103036701
XM_022670332.1 mRNA downstream 331915 19522702 ~ 19570378 (-) True LOC103025665
XM_007239985.3 mRNA downstream 442918 19437633 ~ 19459375 (-) True LOC103025356
XM_022670896.1 mRNA downstream 759013 19122620 ~ 19143280 (-) True LOC111192707
XM_007235649.3 mRNA upstream 136424 20042497 ~ 20089372 (-) False LOC103035481
XM_007235648.3 mRNA upstream 144171 20050244 ~ 20089372 (-) True LOC103035481
XM_022670338.1 mRNA upstream 409943 20316016 ~ 20392201 (-) False LOC103047709
XM_022670337.1 mRNA upstream 409943 20316016 ~ 20392201 (-) True LOC103047709
XM_022670339.1 mRNA upstream 411140 20317213 ~ 20392206 (-) False LOC103047709
TU71983 other downstream 51943 19849950 ~ 19850350 (-) True G53382
TU71687 other downstream 1235006 18586401 ~ 18667287 (-) True G53164
TU70997 other downstream 3312510 16588150 ~ 16589783 (-) True G52652
TU70998 other downstream 3312510 16588150 ~ 16589783 (-) False G52652
XR_002650036.1 other downstream 3474680 16406719 ~ 16427613 (-) False zcchc4
trnai-uau_7 other upstream 396462 20302535 ~ 20302628 (-) True trnai-uau_7
TU72221 other upstream 775738 20681811 ~ 20690422 (-) True G53562
TU72268 other upstream 877665 20783738 ~ 20787618 (-) True G53598
TU72277 other upstream 911766 20817839 ~ 20819409 (-) True G53607
XR_002650112.1 other upstream 2940603 22846676 ~ 22847337 (-) True LOC111192727

Expression Profile