RNA id: XM_007235870.2


Basic Information

Item Value
RNA id XM_007235870.2
length 4174
RNA type mRNA
GC content 0.50
exon number 10
gene id dtx1
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44635726 ~ 44692350 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGAAGCAacagagcccagagagagagaacgagagcgGGGCTGCAAACACACGCTCAACACAGATAACCGCTTCTTTATGctgtttaaaatcattaaacactgttaaatacgcgtttttatgtattttacagtcaTTATATTTGGTTTATTTGGCTGGCGGCTGCTGGGGAAGTCACTGCGTTAAACCTGTTCTGGATTTAATCATCACTGAAGGCTGATGATATTGAACGTGATTCAATTTGGATTTCACTGAGTTGGGACATGCTGCTAAAGACCTTCAACAGAGATCAATAGATGCAACAAGCAGTGAATATCATCATCGTCTTCAAAGATTCCGTTTTACGTATATGCTGGACGTTCACTCAGTGACGAGGCACTCCGGTGTATGATGTTGCCTGAATAATTGCTTTCAAAACTGCTTTGTGGAGACGCCAAGCTGGGAAGCCTTTTTGGTGGTCATGGCTATCCCAGCAGTAAAGAGCTCAGACTCTGATTTGAATCAGACTAAACTTGACTTTGACCGTCTCCACAGACTCTGAATGGAGGAGGGCAGAGTGCTCGGTCTCTGTCCTCTCAGAGAGCTCCAGGCGGTGACCTTCAAGATCTCTTCGGCTCTATTGGAAAGCATTACTTTtatcattgttattttttttaggacaCATCAAGCCCTAAAAGTGTCAGGagaaagtataataataataataataataaaatattttggacGTGGGAAGTGAGTGTGTAAAAGTTTGGAAATGGCTCGGCCCGGATCAGGAGTGCTGGTGTCTGTCGGAGGGGGACTGGGCTACTCCTCTCAGAGCATGGCACGTGTGGTAGTGTGGGAGTGGCTAAACGAACATGGGCGATGGAGACCGTACACTGCAGCTGTGTGCCATCACATCGAGAACATTCTAAAGGGTGACGCGCGTGGAAGCGTCATTCTGGGCCAGGTGGACCCCCAACTATCTCCCTATGTTATAGATCTGCAGTCAATGCACCAATTCAGGCAGGACACAGgcACAATGCGCCCAGTACAGCGGAACTTCTACGACCCGTCCTCAGCCCCCGGCAAAGGAGTAGTGTGGGAATGGGAGAACGACAATGGCTCCTGGACTCCTTACGACATGGAATTGTGTGTGAGCATCCAGAACGCCTACGAGAAGCAGCACCCATGGCTGGACCTAAGCTCACTGGGCTTCAGCTACCTGGTGGACTTTGACAGCATGGCTCAGACCAACCGGCAGAGCCAGAGAAGGCGGCGCATTCGCCGCAGGATGGACCTGGCCTACCCCCTCATTGCAGGCTCTATCCCTAAATCTCAGTCGTGGCCGGTGGGTACTAATTCCGGCACGCCCTGCTCCTGCCAGCAGTGCCTGCTGGTGCACAGCACACGCGCCGCCTCCAACGCCATCCTGGCCTCGCAGCAGAGGAGGAAGCTGTACGGCATGGCGGCTGGGACGGGGGATCAGATGGCCCCCACGGTTCGGCAGAGCAACACTTTCGCCGGCACCTCCCTCTGGTCGTCCGGAGCCGCGGTTGCAGGGGGTCACCATAACAACATAGCAGTAGGCGGGGGAGGAGGTGGAAAAGTGGAGATGAGTACACTTAACTTTCCCTGTGCCCCAGCACTCATGAACCTGCCGACCACTCACACACTGACGATTAACGGGCAGAACAATCTGAACCGCCCAGGAACGCAGCGCATCGTGGTGTCCACCAGCCGTGGAAGTATTCCACCAGGGGTACCTGCACTACCTGTGAAAAACCTCTCAGGGTCGGGACCTGTTCATCCTGCACTAGCAgGGATGACTGGTATTCTGTTGTGTGCTGCCGGGTTGCCCGTGTGTTTGACACGTGCCCCCAAGCCCATTCTGCACCCGCCGCCAGTCAACAAGAGCGACCTGAAGCCAGTGCCTGGAGTTAACGGCATTCGCCGCAAGACCAAGAAAAAACACCTGCGCAAGGGTAAAAATCCAGAGGATGTGGTGCGCAGATACACAGAGAAAATCAAAGTAGCTCCTGATGAGGACTGTACCATCTGCATGGAGAGACTGGTGACATCATCAGGCTATGAAGGTGTGCTGAATCATAAATGCATTAAGCCGGAGCTGGTGGGCAAACTGGGGAAGTGTGGTCACATGTATCACCTGCTCTGCTTAGTAGCCATGTACAACAACGGCAACAAGGATGGCAGTTTGCAGTGTCCTACATGTAAGGCCATCTATGGGGAGAAGACGGGCACACAGCCGCCTGGGAAGATGGAGTATCACATCATCCCCCACAGCCTGCCTGGCTACTCTGAATCAAAGACCATACGAATAGTCTACGACATTCCTGCTGGCATacaaACCACAGAGCATCCTAACCCGGGAAAGAAATTCACAGCGCGTGGTTTCCCTCGGCACTGCTACCTACCTGACAACGAGAAAGGCCGGAAGGTGCTGAAGTTGTTGATCATGGCTTGGGACAGACACCTGATCTTCACCATCGGGACCTCCAGCACCACTGGAGAGTCGGACACAGTGGTCTGGAACGAGATTCACCACAAGACTGAGTTTGGCTCCAACCTCACTGGCCACGGCTACCCCGATCCTAACTATCTGGACAACGTTGTTGTGGAACTGTCAGCACAGGGTGTGGGTGAAGACAACCTGAAGGACTGAAGAGAGCTGCGGTGGAGGACTGCTGTGAGCTGCAGTGGATCTCACAAATGCaaacacaactcacacacaccttTGGACGAGCTTCTGACCTTTAACGTGACCGCCAACCGCTGACCTGAGGTCAAAAGGGACGGATGCACAAATGTGGCGTCTGGAATACACACAGGCAGACGAATGTCTGTGATTTGAGGTGTTTTGAGGAAGGCGTAATGTGGGATAACAATAAGATGCTCTATATGATTCGATTCTGTTTCTGATTGGCCGCCAGTCATTGCTGTCATCTGAGACGGGGGATTTTCGATTTGTTTCTCtttgcaaccaaaaaaaaatgctataggAAGTGCTCTTTGTAAGACCAAGTGAACAGCAGGTCGTAGCTTGGGTGCGCTCTTGGAGGATATTGCGGTGTGTTTCAGCGAGTCAGCGAGTCGGTCGATAgggcagtgagacctgctgggCGGCGTGGAGAACTGTGGTTTCCATGgtgattttgtttttatgccCAGGCCTCTGAGGATAGATGTGCGAGGGTTAAATGGCAGAACTGAGCACCGCTGGGCTTTTCACGCTTGGAGGATTTACCATGGAGACGACATTTGAGGTGTATGTAGTTCAAAGCTTGATGATTGATGGTCTCCGGTTGTGTGATATATTAGCCTGTTTGTGTTGTCACGGTGCCGGCTGGGGGGGTTAGGTTAGATAGCATTTGCTTTTGTAAAGCTTGTGTTTTTCCTGATCTTTAGATCTGTAGATCAATTAGCCAAGGTTGGGGCTAAGCCTTGAGTTTATCTGTGACAAGCTTGCTGAGATCAGAGTGTACAGagttctttctttccttttgaACAATAAGGGGGTGTTCTCCTggaagaaaaacatttatttctcttattttgttatctctctatctttgtctctatctctctctatcttttttacGATCGTTCCGATTGAGCCTTGAATATGAAGACATATGTCAGTAAGTTCTTTGTTTACCGGAACCCTTGCTCATCCTCGCCACAGCAAGGAGATTTAGGCTGATAAAGTACTGCACTGGGCTCGCTCTGATCAGACCTGAGCAGATAAATCACAAAGCCTTCGAATCTGTGCTTCCTTTCAAGGTTAAACTCATTTGCAGTGACTGGCTCTGCCATGCCGCGGCCCTCGCTGAGGAACACACGCTCATTATACCGCCCGTGGAGACAGCAGAGCTCTCAGTGTGATCCATCATGAGGAGCGTGAATGCGAGCGTGTATGTTACTGCATGTATAAGCTCTCTCCAGTCATTGAGCAGGAGTTTTAGTCCTGCTATTCCAGATAAGATTGTGCCAGATTCCACCAACCAGATTCCATACACTGCTGAAACATCAGTGAGCAGTGTTAGCCCGGTATTGGGTCAGCACCAAACTCATGGTCTTGAAGTGACATGTGAAGCAAGTTTAAGTCTACgtttacacagcaggtaaaagtggcccaaattcgatatttatttaaagctgTTCACACTTTTTAATG

Function

GO: NA

KEGG:

id description
K06058 DTX; deltex

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79121 lncRNA upstream 51808 44579080 ~ 44583918 (+) True LOC103028384
TU79086 lncRNA upstream 189245 44440050 ~ 44446481 (+) False LOC111192736
TU79077 lncRNA upstream 202250 44429972 ~ 44433476 (+) True G58658
TU79016 lncRNA upstream 208751 44366384 ~ 44426975 (+) True G58610
TU79013 lncRNA upstream 210656 44340974 ~ 44425070 (+) True G58609
TU79218 lncRNA downstream 81912 44774262 ~ 44774597 (+) True G58768
TU79250 lncRNA downstream 110476 44802826 ~ 44805244 (+) False G58788
TU79243 lncRNA downstream 111072 44803422 ~ 44810711 (+) False G58788
TU79254 lncRNA downstream 111072 44803422 ~ 44810711 (+) True G58788
TU79297 lncRNA downstream 206339 44898689 ~ 44899860 (+) True G58820
XM_007235867.3 mRNA upstream 68215 44555413 ~ 44567511 (+) True LOC103027865
XM_007235865.3 mRNA upstream 94744 44535869 ~ 44540982 (+) True LOC103027244
XM_022670932.1 mRNA upstream 106274 44448432 ~ 44529452 (+) True LOC103030075
XM_022670962.1 mRNA upstream 189223 44435858 ~ 44446503 (+) True LOC111192736
XM_022670934.1 mRNA downstream 146079 44838429 ~ 44839196 (+) True LOC111192718
XM_007235872.2 mRNA downstream 160430 44852780 ~ 44866838 (+) True LOC103029434
XM_022670935.1 mRNA downstream 811741 45504091 ~ 45521326 (+) True LOC103029982
XM_007238287.3 mRNA downstream 829423 45521773 ~ 45534629 (+) False creld1
XM_007238286.3 mRNA downstream 829699 45522049 ~ 45534629 (+) True creld1
TU79126 other upstream 34766 44595233 ~ 44600960 (+) True G58696
TU79125 other upstream 34766 44595922 ~ 44600960 (+) False G58696
XR_002650089.1 other upstream 51808 44579126 ~ 44583918 (+) False LOC103028384
TU78895 other upstream 974079 43660782 ~ 43661647 (+) True G58529
trnar-ucg_3 other upstream 1796816 42838838 ~ 42838910 (+) True trnar-ucg_3
XR_002650090.1 other downstream 160430 44852780 ~ 44866838 (+) False LOC103029434
TU79487 other downstream 1097361 45789711 ~ 45790154 (+) True G58971
TU79888 other downstream 2160014 46852364 ~ 46881891 (+) True G59257
TU80591 other downstream 4177817 48870167 ~ 48879623 (+) True G59782
TU80616 other downstream 4305810 48998160 ~ 48998471 (+) True G59806

Expression Profile