RNA id: XM_007236385.3


Basic Information

Item Value
RNA id XM_007236385.3
length 6558
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC103034196
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 4930544 ~ 4943083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCCAGCGGCCCGGGGACTGCAGCAGCCCGAGCCCGGCTCGGCTCCAGCGCGCGGGGGAGCGGCCAGCGGCTCCAGGACAGCCCGGTAATATGAAATCATAGTACATGGAAAAAGTGTGGATACCTGGCTAGATGGGTGAAAGAGGCTAGTGGAACAAGCATGTGGGATCCCAACAATGccgTGAAAGCAGAGGAACAGTCTGTTTCATCAGGAAAGCAGCAACAGCAGGCTATAATTTTGCAGAGCCCCACTGAGAATCAGAAGCCTTCTCTGAGTGGGGAAACTCCTCCCCTGGGTGTCTCAGGGCAGAAACAACAGAAGGCTGAAAGTGAGACAGAAGGACGTGCAGATGAGGTGATGGAAAACTCTGTTGAAGATCAGAACATCTTTCAGGTACAGAGAACCAGCTGTCCACCTGTAGAGACAATGTCCTTGCAAATTAGGGATATACCAAACTCTAATGCATCTTGCATCAATACGGGTGAGACAGAGGAGTCGGGAATGCACCAACAGGACTCTGGATTTTCCTGTCAGCACTGTCAGAAACAGTTCACAACCAAACAAGGCCTGGAGCAGCACTTGCACGCCTCAAAATCCTGCAACACACAGACGTTTAGGTGCCGATACTGCCGAAAGTCCTTCAACACGCAGTTTGGACGCCGTCGGCATGAGAGAAGACATGATAACTCGAATAGAAGGATGGGTACTTTGATAGTCAGTGCATCTTCGCAAGTGGAGGGACAGACGCAAGTCATGGTCTCTTCAGAAGAGGGTGAACAGAGAGTCGTAGCATCACAAACAATTACGGAGTCTCTTGTGCCTGATTTCGACGGGAAAGGCGATTCCGATGAAAGTGGTGAGAGAAAAGCCAAAGCCTCTTTAGCCTGCAGGTACTGCAAAAAAGCCTTTGGAACTCACACCAACCTTCGAAGGCACGAGCGCAGGATACATGAGCGCCATCTCTTACCCAGGAGGCTCTGTCGAAAGGTTGCAAATTGCCAGGACCTTCCGGGACAGCAGCCTGGTGAGGATGCGGAAGCCTTTACAATTGGCAGCAAACAGCGTGAACAAGAGGAAGAGTTCATGGTTGACATCTCCAGCAACATCTCAGAGAATCTTAGCTTCTACATCGACGGGAAAATCATCTCAACCAGTGCTGTCACCAACTGTGAGATGATGGAGGTGAACTCCggcgctgctgctgcagtgaTTGGCCTGGATGCCTTGATCATCAGTCCAGCTCAGATTACGCAAGCTCTTAAAATAGATACTAATGACTACAGTACAACCTCTGACCTGTGTGGTCAACCTTCTGGCAGAAGGAGGACATCTACTCCTCCTTTGCTGCCACAAATTAAAACAGAACTGGAATCGGAATCTATCTTGACAACGTCTTCCTCCGGACCGACGGTGATAGGTACGGTTCTTCCACAGCCTTTGGAGACCATTGTTCTACAAAAAGAGAAGACTATCTATTTGTCTCCAAAGCTGAAACAGCTTCTACAGAACCAGGACAGCAGCAAGTCTTTTGCTCTTATTGGTGATGGGCAAAAACTCTGCCCTCCTTTACCACTGACCCTTGTATCGGCTGGAACAAGTAGATTTAAGAGGAGGACATCGTCTCCAACAAGTTCTCCACAGCATAGCAGGGAATCTGGCATTAAATCCACCCTACTGATCCAGGAACAGAGTTCTCCTCCCAATAAAGTCCAAAAGACAAACAGTCCTAATACATCTCCTGCGATAAGCTTGTGTAAAAATTATGAAATGGAAAATCTGAATATAGACACGACTGGCACTACTGCAATCCCACAAGTTTTGCCATTGGACTGCTCTACATCAGGAACCGGTGGAAGGTCCTGTAACCAGCAGCCACTAGACCTTTCCAATGCTGTGGGCAAGAGAAACAGCGAAGTCTTAGCTGATGAATGTGTCCTGGACCTCAGCACGGGCAGAAAGAGTACAGAGGCTGACCTAACAGGAAGCTCAGCATCCCAGACAACGATCAGGAGGATTAAGCCCAACTCAAGCATGTTGGAGAAAGTCTTGCTAAGCCAATATGCTGCAACTGCTGTGGATGTCCCACCAGGATGTGCTGCAGGAGATGCTGCAACCTTACATGCTCCTGTAGTGGCAGATCTTGCAGTAATGGCTGTATCTGAGCCCATTTCAGCCAATCCTGGACCTGAAAGGGTTGTGTTTGAGTTGGCTCTGCCCTCTCCTTCTACAATCAACGCATCTCCTCATCCGTTAAATGCTGCTGTCCTACAGACTACCCCTCCATCCCACATCCTCTCAGCTCCATCTTCATCAACGGCAGTGCCCACTGAGATACTGCCAACTGTACCATCAGTAATATCCATACCTAATCAAGAACTTTTCCCGCTCTGCTCTAGTGCCCAGTCTTTCATACCTATAGTGCCCACAACTACCGTAGAAGTTCCTACTGACAATCCTTTGCCAGCTTTTAATGTATCGCTCCCTGATTGGCTTAATTCTGCTCCTGGAAGTGTGACCCATGCACTCATACCTACAACGGCACCTTTGAGTTTGCAAAGTCCTCAGTTTCTGACAGATCCATCTGTGTGTGATCTAGCGCAAAGAACCTTGGTTGTAGATTCTGTCTTGTCACCTGAGGCACAGATATTTTCCCCCTCACTGTCAGTGAACCAGTCAAACATTACCTCCTTGAGTTTTCCTCCAAACGTGGTCGTTATTGAGTACACGGTTGCGCTGGAGTCAACTGATGCTCCTGCTATCCTTCAAGCCAATGCTGTTCACTCCCTTTCTGACTGCAACCCACCAGATCAAGCTAAATCAGGAGAGATTCTTGACTCACCACAACCTCAGGCTACTGCTCAGACTGAGCAGTTAGCTCCTGAACTGCAACAGCCTGGCACTCACCCTGACCCAATTCCTCAAGACCTGGCACTTGGCTTGCACTCATCCACTAATGGAGGCTCATCTTTAGCATCTTTAGAGAACCCAGCAACTACTGTTGAACCATCTCCTTCTAAACCCAATTTTACAGGAAATGTCCAGGAGAGCCAATTGGAGCCTGTAGACCCTTCCAACTGCTCTGTAAACCCTACTACCGAAACTACAGATGGCTCGACAATGGACGATTCCGTCAGCGAGGAAGCTTCAAACCTGTTGCCACTGTGCAAGCACTTCATGTGCAATGCTTGCGATGAGACCTTCCCGTCAATGAAGGGTCTAAGTCGCCACATTGGCGAGCACTCAAAAACCTGGCCATACAAATGCGAGTTTTGCGTGCAGTTGTTTGAGAGTGATACTGGCTTATTAGAGCACCGTTCCAGTTATCACGGCATTGGCAAAATCTACGTCTGCAGGATATGCTCTAAGGAGTTTGCCTTTCTTTGCAACCTAGAGCAACATCAGCGAGATGTGCATCCTGGTCAAGAGTGTTCACACACTGAGGTAGAAAATGGCAAGTTAAGACCAGAAAACCACAACAGTCCAATAAAGATGGACACTGAAACATCAGTGTATCCAGTGTACCCTACAAAACAAGACCTTGAAAAGACCTACAAATGTGACCAGACTCCAAAACCAGCTGTAAAAGAAGAGGAAAACGGCAATGACTCTGACCACACTACTGAGGAGTTATACACCACCATCAAGATCATGGCATCAGAAGGAGTCAAACCCAAAGGTACAGATGTGCGACTCGGCATTAACCAGCATTATCCGAGTTTTAAGCCACCTCCCTTTCCATACCACAACCGGACACCAGCCACGACGACAACTGCAACGGCAACGAACTTCACTACACACAACATCCCCCAGACCTTCAGTACTGCGATTCGCTGCACCAAGTGTGGCAAAAGCTTTGACAACATGCCTGAGCTGCACAAGCACATATTAGCTTGTGCTAACGCTAGCGACAAGAAGCGTTACACCCCTAAAAAGAACCCTATACCACTTAAGCAATTCGCAAAAACGCAAAATGGAGTTTTGTCACCTGCCAGAGGAGTCAACAGTCGACAGAACGTCTCACAAAAGATCGGACACAAAGTGAAGCTAAACATGCACAGTAAGAAGAAATCTATGTGGGTGCAGAGGAGTAGACACCACGTGGGAAGGAAAGGTTTGTCGGAGGAGCTGGATCTTTATGCCTGTCCTCACTGTGGCAAAGAATTTACCTACCAAGCCAGCCTGAAGAAACATATTGTCATCAGCTGCCCAATGAAACCTGTGTGCAACAAGAAgtccaaaaaaagaaagggcAGCGTGACACCAGCGCAGGAGAACAACGGGAGCATCCGGACACGTGTAGCAGAAGTCATAATGAAACAACGCCGATCAAACCAAGGACAGAAAATCTTCAAAAAGGCACAAATCAGTGAATCTGCTTCTGCTGACAACGCCAATCTAGCAATTAAAGCTCAGGACGGTAAGCGGAAAATTATAGTGCATAATTTTCGGCCTAAAAGGTCTGACGTTCTCTCAGCAACCTCAGCGGTTCACCTCAGTAAGAAAAGCAAACACGTCCTAATGGAAGGCATTCAGTCCACACCACAGACCTTGCAGAAGTCTTCCACACTGCAAGGAAAATCTCATCAGCAGCCACCCACCCACAGGGTTCACGGCGGCATTGGCAGGGAAATAAAGCAGCGAGAGGTAAACGTTAAGCTTCATCCCCGGACAGAGGAACAGTTCTCAGGACAGAGGGGGAAAGAAAGGACGGAACGGCCTATTACTCGCAGTCTCCAGCAGGTCAATACCACAGTGAACActgtggctaatgctaacaacagAAAAGCTAACACGATTACTCTAGCCAGACACCCAGTCCAGACAGACAGTCGGAATATCAGTGCATATTCTGAAGTAATCGATTCAAAGAAATAGACAACGTAATGTATCTAAGAATACATTTAAGAAGATGGACAAGAAGCTAATTATTGATTTAAATCTCAAAAGTTATGTTTtatctgtaaatactgtatgttccaaaaaaaataagtggTATGACCTTTTGATCCGAAAACTTTAACACTGTAGAAGAGACTGAATGTGGATTTGATGATTTTATGAAGATgatttattgatgtttttttttttttttttgtgaaatatgtTGCACATATTGCTCTTTAAACCAGGGTTCTCGTTTCTTTATTAATACTTTCAAATTATGTCTTATAACtagtattacatttaaaaatgagatTTCAACAAAGGCATCCATAACCCAGTCAATCTTGTGTAATTAACTGAATAAGTCATTTTAAGGCATCGTTGCTTATTCCTATTTCTAGTTTAAGATTGGGAAACCTCTATTAGAGGGGAATTGCAGCTTGCCACAAAATAGCCTtgggtcccatgacttttggcacatcctatgaaagctaaaaaaaaaaacccacatgtgacactgtggatagaGGAATGCTAAATACCCCCCACACTTGTACACAAACTTGTACAGGTGTCAAAAGTTAGATTTTCCTAAGCCGCTCTCTCAACTAAAACTTAGCAATCAGTttgcatactgctgtcccatgactatTGGCATGCCAGGCATGTCAATGTAAATCATTTGGCTAAAACATAAGTAAACTTACCCCCAAAAGCCGTGAATATGGTATTGGCAGTGAAGGAAAGCTAATGGCCCTAAGCTACATtggttttaatataattatttctgCGTAATTCAAACTGGTCTCAAACCTTTTAAGcttatagttattattattatcataattaGCAACGTTAGCATGTTAACAACATTCGCAAATGTTCATAAAGCATGTCTGATCAATGTGGTTAATCTGTCTGTCCACTGTCTGTATTTCTCCTTACCTAATCCAGAACATCCTCATAAATACCTAATATAGTTAATATAGTATATCAAACTTGGACAATACTGATGTTCAGCCTCAACAGAGTGACAATATCAAAAACAATAGTAGCATGACCAAAACGCCGGTCCACAGGCTGGGTTACTTCTGTTTCTGGagtgcttttttttgtgtgcaaaaaaaagaaaaaaaaaacatctggatatttatttacactggaaattccctttgttcaattttttatatgttttatttattgttctcaTGCACTTTATAGATCACTGTCTGTGTTGTATCAGACTAGTTGCAATGCTAGATTATTAGTGACATATTTCAGTTGTTTATTTAAGGATAAGGTTTACTGTTAGTCAaaagaatatttatatatatacacagtcatATCAGAATATTATGGCCATCTTTTTTGTAGTCCTTTGTAATtctattataattacagactgtagtcctttatctgtttctctgcatactttattattatcattcttTATATGCTCTGTTCTACAGAGTTACAGGGGAAAGGGGTGAAATCTTTTGACATTTGccaataaacagtatatatataacactgctttattaccagacTATGAATGGTGGTCCATAAGCGGCCCTGCCAGGCTAATGTGATACCAAGCTGCTGCCGCTTAACCAtgttataaggcgcactatcaataaacctttactggtctattttcatacataaagcgcacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67115 lncRNA upstream 83122 4822397 ~ 4847422 (+) True G49649
TU67111 lncRNA upstream 140524 4789225 ~ 4790020 (+) False G49646
TU67112 lncRNA upstream 140524 4789225 ~ 4790020 (+) True G49646
TU67076 lncRNA upstream 174856 4725356 ~ 4755688 (+) True G49613
TU67078 lncRNA upstream 272483 4654754 ~ 4658061 (+) True G49615
XR_001518342.2 lncRNA downstream 54743 4997826 ~ 5002094 (+) True LOC107197045
TU67140 lncRNA downstream 59526 5002609 ~ 5003622 (+) True G49673
TU67150 lncRNA downstream 78989 5022072 ~ 5026202 (+) True G49682
TU67153 lncRNA downstream 94586 5037669 ~ 5038409 (+) True G49684
TU67166 lncRNA downstream 155665 5098748 ~ 5099463 (+) True G49697
XM_022671039.1 mRNA upstream 21342 4889708 ~ 4909202 (+) True pdpn
XM_022671040.1 mRNA upstream 21342 4889712 ~ 4909202 (+) False pdpn
XM_022670972.1 mRNA upstream 410879 4393701 ~ 4519665 (+) True bcar3
XM_022671029.1 mRNA upstream 699557 4199939 ~ 4230987 (+) True spata6
XM_022671025.1 mRNA upstream 735830 3519608 ~ 4194714 (+) True agbl4
XM_022671042.1 mRNA downstream 11194 4954277 ~ 4993901 (+) True LOC103035057
XM_022671049.1 mRNA downstream 257947 5201030 ~ 5210826 (+) True nfya
XM_022671048.1 mRNA downstream 257947 5201030 ~ 5207421 (+) False nfya
XM_022671046.1 mRNA downstream 270321 5213404 ~ 5258615 (+) True ahcyl1
XM_022671047.1 mRNA downstream 270321 5213404 ~ 5258615 (+) False ahcyl1
TU66895 other upstream 684317 4244528 ~ 4246227 (+) True G49475
TU66507 other upstream 1916914 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 1916914 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 1916914 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 4119279 808155 ~ 811265 (+) True G48714
TU67370 other downstream 676076 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 833969 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 1428437 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 2041107 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 3264259 8207342 ~ 8221162 (+) True G50568

Expression Profile