RNA id: XM_007236976.3


Basic Information

Item Value
RNA id XM_007236976.3
length 595
RNA type mRNA
GC content 0.52
exon number 3
gene id ndufb11
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49602791 ~ 49606898 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTAGTGTTTCCAGATCAGCTGGGGGTGACCCGgtatcggtgtgtgtgtgtgtgtcctcggAAGGTGTGTGTGATGGCTCCGTTACTCCGCGCGCTTCACTCGGGGCTCCGCTCCGCGTGTCTTGCACGCGCCGTGTCGAACAGCGCGCGCTCCCGGGGCGTCGCCGTTACAGAGCTGCCGCAGCGCGCGGCGGATAAACATGAGCACGAAGAGGTCAACGTCTTCgaccagAACCCAGACTACCATGGTTTCTCCTCAGACCCACATGTGGACGAGTGGAACATGAGGCTGGCCTTCTTCTTTGGTGTTTCTTTGGTTATCGTTGTCGGAGGAACTTTCATCCACTATTTACCAGACCATGGTATGAGGCAATGGGCTCGCCGGGAGGCCGAGAGGCTGATTAAAGAGAGGGAAGCTGCTGGTCTGCCACTGCTTGACGAGAATTACTACGACCCAAGCAAGATCATCCTGCCCTCGTCCTCAGACGAATAGACAAATAGCTTTGCCACTTACCTATCCTGTTCATTTGTGTTTGACTGTACATTAAATTCTGCTAACCTatctcaataaaaataatatcaaattTCATGTAAA

Function

GO: NA

KEGG:

id description
K11351 NDUFB11; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80791 lncRNA upstream 55810 49544649 ~ 49546981 (+) True G59960
TU80829 lncRNA upstream 99068 49503517 ~ 49503723 (+) True G59996
TU80819 lncRNA upstream 123434 49479085 ~ 49479357 (+) True G59986
TU80809 lncRNA upstream 142285 49459449 ~ 49460506 (+) True G59976
TU80804 lncRNA upstream 147688 49454429 ~ 49455103 (+) True G59972
TU80860 lncRNA downstream 73744 49680642 ~ 49683666 (+) True G60013
TU80864 lncRNA downstream 148385 49755283 ~ 49755595 (+) True G60017
TU80880 lncRNA downstream 260720 49867618 ~ 49918681 (+) False LOC103025235
TU80883 lncRNA downstream 309753 49916651 ~ 49990417 (+) False LOC103025235
TU80898 lncRNA downstream 332618 49939516 ~ 49988936 (+) False G60034
XM_022670834.1 mRNA upstream 1985 49570712 ~ 49600806 (+) True LOC103028292
XM_007236977.3 mRNA upstream 33956 49548644 ~ 49568835 (+) True sin3b
XM_022670936.1 mRNA upstream 63050 49470432 ~ 49539741 (+) True LOC103028608
XM_007236978.3 mRNA upstream 257316 49322278 ~ 49345475 (+) True lhx4
XM_022670831.1 mRNA upstream 294016 49272994 ~ 49308775 (+) True LOC103029228
XM_007236974.2 mRNA downstream 1701 49608599 ~ 49613480 (+) True LOC103028705
XM_022670937.1 mRNA downstream 20196 49627094 ~ 49643347 (+) True LOC103027985
XM_007236973.3 mRNA downstream 42661 49649559 ~ 49661539 (+) True LOC103028393
XM_022670835.1 mRNA downstream 55908 49662806 ~ 49666402 (+) True LOC103028085
XM_007236972.2 mRNA downstream 56607 49663505 ~ 49666402 (+) False LOC103028085
TU80792 other upstream 165178 49423516 ~ 49437613 (+) True G59961
TU80616 other upstream 604320 48998160 ~ 48998471 (+) True G59806
TU80591 other upstream 723168 48870167 ~ 48879623 (+) True G59782
TU79888 other upstream 2720900 46852364 ~ 46881891 (+) True G59257
TU79487 other upstream 3812637 45789711 ~ 45790154 (+) True G58971
XR_002650102.1 other downstream 1032596 50639494 ~ 50652274 (+) False LOC103045694
TU81516 other downstream 1669302 51276200 ~ 51286140 (+) True G60481
TU81517 other downstream 1675092 51281990 ~ 51286140 (+) False G60481
TU81531 other downstream 1796436 51403334 ~ 51409013 (+) False hdac6
TU81766 other downstream 2158193 51765091 ~ 51765620 (+) False otud5

Expression Profile