RNA id: XM_007237001.3


Basic Information

Item Value
RNA id XM_007237001.3
length 1137
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC103038409
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 47927955 ~ 47933611 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCATTCTTTTGGAGAAAGTAGTAGCTTGTGTAACAATGGCACTGGAGCTGTATCTTGACCTGCACTCTCAGCCTTGTCGTTCTGTCTACATCTTTGCCAAGCTAGCGAACATTCCTTTTGAATTCAAAGCCGTGGACCTCTCTTCAGGTGAAAACTATGGTGAAGGCTTTGGAAAGGTCAGCATTTTAAGAAAAGTGCCCGTCCTTAAAGATGAAGCTTTTATCCTCACAGAAAGCACGGCGATCCTGCAGTACCTGGCAAAGAAGTATTCCACTCCAGACCACTGGTATCCCGCTGACATGCAGAAGCGCGCTCGGGTTGATGAGTATCTTTCTTGGCAACATACCAACATAAGGCCCCACGGCTCAAAGGTCTTTTGGTTCAGGGGTGTCTTGCCAGTGGTCACTGGAGCTCCAGTTCCAAAAGAGAAGATGGATTCTGCAATGGAAGACCTGAATACATCCCTTAAGCTGTTTGAGGAGAAGTTCCTACAGGATAAGCCTTTCATAATTGGAGACCAGATCTCTCTGGCTGATCTGGTAGCCATAGTGGAGGTCATGCAGcCGTTCGGAACAGGCTTGGATGTGTTTGAGGGCAGGCCGACTCTAAAAGCGTGGATGGACAGAGTAAAGAAGGAGATTGGAGTGGAACTGTTCGACGAGGCCCATAACATTATCATGAATGTGGCCTTACTTCCACAGACCTTTGAGAACAAAGGTTTACCAGATGCTCTTAAGATGCGGATCATGAAAATGTTCAACTGATGTTCCATCTGCCATCTTTCTGAATTGTCTACAGAACTCTTTTGGAAAAGAAACGTCCATGCCCCCTTATGCTTTCTGGTGCAAATTCACTGGCACTATTTCTTAAAGCCATATTTCATCAGTCTGACCCCTCTCTGCTCATCAGTGAAGTTTCTGTTATGGAAAGAAGGAAGCAGTATGCATACAATTTGCAGATTCGTATCTGCCTCACAGTAAGAATAAACTACAGACTTTTAACACATAGGCTTGTCTTAAGAACATTATACATCCATACATTTCACCACATAAGCTTAATTAGTAAACTATGAGCTCTGTATCTAAATCTGTATTGGAAATAAATATCATGCAAAACTGTTATGCTTTGGATAAAA

Function

GO: NA

KEGG:

id description
K00799 GST, gst; glutathione S-transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80382 lncRNA upstream 6908 47920308 ~ 47921047 (+) True G59603
TU80375 lncRNA upstream 8621 47912516 ~ 47919334 (+) True G59597
TU80376 lncRNA upstream 8621 47912516 ~ 47919334 (+) False G59597
TU80314 lncRNA upstream 266598 47660186 ~ 47661357 (+) False gnb1
TU80296 lncRNA upstream 416533 47467704 ~ 47511422 (+) True G59555
TU80536 lncRNA downstream 489678 48423289 ~ 48423506 (+) True G59731
TU80537 lncRNA downstream 497311 48430922 ~ 48431231 (+) True G59732
TU80538 lncRNA downstream 500362 48433973 ~ 48434203 (+) True G59733
TU80539 lncRNA downstream 544226 48477837 ~ 48478110 (+) True G59734
TU80540 lncRNA downstream 544709 48478320 ~ 48478763 (+) True G59735
XM_022670807.1 mRNA upstream 34000 47880396 ~ 47893955 (+) True il17rb
XM_022670805.1 mRNA upstream 71423 47711376 ~ 47856532 (+) True cacna1d
XM_022670806.1 mRNA upstream 71423 47711376 ~ 47856532 (+) False cacna1d
XM_007237025.3 mRNA upstream 255658 47664880 ~ 47672297 (+) True LOC103044878
XM_007237022.3 mRNA upstream 266598 47623554 ~ 47661357 (+) True gnb1
XM_022670808.1 mRNA downstream 64482 47998093 ~ 48418212 (+) True cacna2d3
XM_022670809.1 mRNA downstream 64482 47998093 ~ 48418212 (+) False cacna2d3
XM_022670810.1 mRNA downstream 160001 48093612 ~ 48418212 (+) False cacna2d3
XM_022670826.1 mRNA downstream 1269657 49203268 ~ 49268872 (+) True cep350
XM_022670828.1 mRNA downstream 1269657 49203268 ~ 49268872 (+) False cep350
TU79888 other upstream 1046064 46852364 ~ 46881891 (+) True G59257
TU79487 other upstream 2137801 45789711 ~ 45790154 (+) True G58971
XR_002650090.1 other upstream 3061117 44852780 ~ 44866838 (+) False LOC103029434
TU79126 other upstream 3326995 44595233 ~ 44600960 (+) True G58696
TU80591 other downstream 936556 48870167 ~ 48879623 (+) True G59782
TU80616 other downstream 1064549 48998160 ~ 48998471 (+) True G59806
TU80792 other downstream 1489905 49423516 ~ 49437613 (+) True G59961
XR_002650102.1 other downstream 2705883 50639494 ~ 50652274 (+) False LOC103045694
TU81516 other downstream 3342589 51276200 ~ 51286140 (+) True G60481

Expression Profile