RNA id: XM_007237029.2


Basic Information

Item Value
RNA id XM_007237029.2
length 1381
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC103046011
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46988976 ~ 47024024 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacacacacacacacacacacagacacacacacacatacacacacacatacacacactcgtaTAGCTATACTTCCTGATCTTCTCGAGAGGAGATGTTTTAAACTTTAGTAGCACACCTCATTCAGCTGCattcaagaaaaaaacaaacacactcaaacacacaccatagagagagagagagagagagagaggatggacCAGCAGAAGAAGgatgAAAAGAGACCCATCAAGCGAATGAGGAGTCCCACACGATTCACTCGTCCGTTTACTCGGGGCAGATACTTTCGTCCTCGGTTTTATTACAGGGCGAGGGATGACCGCTTCATGCGGCGCCCTGGCTTCGGCCTGAGGCTCCACCGGCTCCATCCGCTTCCCAGAGCCCCGTCTCTTCGGCTGAGGGCCAGATCCAGGAGCCCCACCCTGGTGCTGAAACACAAGGTCATACAGTCTTCCTCACCATCGCCTAGCCAGCGCTCGGAAAAGAGGTCAGAGAAGAAGAGCTCGTCCACTACACTAAGAGAACACAAGCCTAATACTCCAGACCACTCCCGGTTCTCTTCGGCAGTTTCTGAAAGACCACAGATGTCATTCACAgtcacTCAGGAAGGGCAGGTATGCAGCAGTAGAGACTCTCTCTCCTCGGTCACTCGCGCAGCTGCCAGAAACAGAGCCatccagagaaagagagaagagatagaGGAGGTGTATCGGCGTGACTGTGACACATTCGGTGTTGTGGTGAAGATGCTGGTAGCGAAGGACCCTACTCTGGAGAGGTCTATCCAGTCGTCTCTAAGAGAGAACCTGCGTGAGATCGGCCTGCGCTGCGTGGAGGCCATGGAGCAGTTCATCCAGGAGTACGACTGCAGAGAGCCGGGAACGCTGCCCGTCCCGCAGCCGCACTGACCTGCGCAGACTGACCTGAGGACAGTCCCTCTCCTGCTGAACGTActggagtaaaataaaagagacTGGAGGTGGAAATAGTCGTAGAAGAAGGGGAGCGACGTTATCGTCACATCAGCTAACGTGATGGGCGGTGTTGTAGAGTTGAAAGCACCTGTCCAGACACTTTTTATGTGAAGGGAAAAGGTGTGTTGTTGGAAATAATACATCACTTATCTCAGTGCTTTAGTGCAGATCATGACTACTATCCATGCGTCCAACAGTGGCGTTTTTTTAGCAAAgctaaaagtgtttcagcacaAAACAAGCAGCACGTGAGGATGAGAATTCATGTTTTACAAATGCTGTATCTTTCTCTCCTTTCGCTTCTGAGATTGTAGATATTAGTGCAAGATTTATataaatactagtgcatctcaaaaaattagaatatcattaaaaagttactgtactactttcagtaattcagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79924 lncRNA upstream 57293 46926679 ~ 46931683 (+) True G59285
TU79912 lncRNA upstream 101953 46883350 ~ 46887023 (+) True G59276
TU79889 lncRNA upstream 128373 46852364 ~ 46860603 (+) False G59257
TU79895 lncRNA upstream 164290 46819166 ~ 46824686 (+) True G59259
XR_002650119.1 lncRNA upstream 298016 46690257 ~ 46690960 (+) True LOC111192739
TU80261 lncRNA downstream 185577 47209601 ~ 47213248 (+) True G59525
TU80278 lncRNA downstream 309471 47333495 ~ 47340169 (+) True G59539
TU80281 lncRNA downstream 320986 47345010 ~ 47345582 (+) False G59542
TU80282 lncRNA downstream 320986 47345010 ~ 47345520 (+) True G59542
TU80284 lncRNA downstream 407573 47431597 ~ 47435387 (+) True G59544
XM_007237031.3 mRNA upstream 21542 46957106 ~ 46967434 (+) True LOC103046622
XM_007237040.3 mRNA upstream 65684 46908282 ~ 46923292 (+) True LOC103022408
XM_007237033.2 mRNA upstream 137744 46827968 ~ 46851232 (+) True mmp23b
XM_022670967.1 mRNA upstream 291461 46696479 ~ 46697515 (+) True LOC111192740
XM_022670965.1 mRNA upstream 565742 46405754 ~ 46423234 (+) True LOC111192738
XM_015602375.2 mRNA downstream 172637 47196661 ~ 47198250 (+) True LOC103040284
XM_022670801.1 mRNA downstream 473590 47497614 ~ 47593327 (+) True cfap74
XM_022670802.1 mRNA downstream 473590 47497614 ~ 47593327 (+) False cfap74
XM_007237022.3 mRNA downstream 599530 47623554 ~ 47661357 (+) True gnb1
XM_022670803.1 mRNA downstream 621217 47645241 ~ 47661357 (+) False gnb1
TU79888 other upstream 107085 46852364 ~ 46881891 (+) True G59257
TU79487 other upstream 1198822 45789711 ~ 45790154 (+) True G58971
XR_002650090.1 other upstream 2122138 44852780 ~ 44866838 (+) False LOC103029434
TU79126 other upstream 2388016 44595233 ~ 44600960 (+) True G58696
TU80591 other downstream 1846143 48870167 ~ 48879623 (+) True G59782
TU80616 other downstream 1974136 48998160 ~ 48998471 (+) True G59806
TU80792 other downstream 2399492 49423516 ~ 49437613 (+) True G59961
XR_002650102.1 other downstream 3615470 50639494 ~ 50652274 (+) False LOC103045694
TU81516 other downstream 4252176 51276200 ~ 51286140 (+) True G60481

Expression Profile